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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX98698 Canola mitochondrion 65.95 94.88
AT4G21705.1 Thale cress mitochondrion 57.69 82.32
KRH10858 Soybean mitochondrion 39.6 57.2
VIT_10s0597g00040.t01 Wine grape extracellular 40.74 56.52
Solyc02g078350.2.1 Tomato cytosol, mitochondrion 33.9 48.47
PGSC0003DMT400076417 Potato cytosol, mitochondrion 33.48 47.86
GSMUA_Achr1P02980_001 Banana mitochondrion 34.62 45.85
Os07t0598500-01 Rice mitochondrion 30.77 42.69
EER91421 Sorghum mitochondrion 29.91 42.34
TraesCS1B01G188100.1 Wheat mitochondrion 30.63 42.07
TraesCS1D01G166800.1 Wheat mitochondrion 30.34 41.68
TraesCS1A01G168800.1 Wheat mitochondrion 30.34 41.68
HORVU1Hr1G045170.4 Barley cytosol, mitochondrion, nucleus, plastid 30.77 41.62
Zm00001d013923_P001 Maize mitochondrion 28.77 40.4
EER90330 Sorghum mitochondrion 28.21 39.44
EER90329 Sorghum mitochondrion 27.92 38.97
CDY35213 Canola cytosol 1.99 34.15
CDY50357 Canola mitochondrion 9.12 32.0
CDY24553 Canola mitochondrion 12.96 31.6
CDX96239 Canola mitochondrion 20.66 29.53
CDY46999 Canola mitochondrion 20.66 29.53
CDY34141 Canola mitochondrion 20.37 29.07
CDY03299 Canola mitochondrion 19.37 28.75
CDY39781 Canola mitochondrion 19.52 28.66
CDY50358 Canola cytosol 9.54 28.51
CDX91822 Canola mitochondrion 20.23 28.4
CDX89976 Canola mitochondrion 20.8 28.35
CDY15237 Canola mitochondrion 20.66 28.27
CDY71968 Canola plastid 11.68 28.08
CDX90962 Canola mitochondrion 19.94 27.94
CDY25035 Canola mitochondrion, plastid 19.23 27.55
CDX99984 Canola mitochondrion 18.38 26.99
CDY19721 Canola mitochondrion 18.23 26.83
CDX90079 Canola mitochondrion 19.52 26.76
CDY65573 Canola mitochondrion 14.1 26.76
CDY15126 Canola cytosol, mitochondrion, plastid 19.23 26.37
CDX97288 Canola mitochondrion 18.66 25.49
CDY00734 Canola mitochondrion 6.41 25.42
CDY27645 Canola mitochondrion 9.26 25.1
CDY44801 Canola mitochondrion 14.39 25.0
CDY05574 Canola mitochondrion 18.66 25.0
CDX91277 Canola mitochondrion 18.23 24.66
CDY35212 Canola mitochondrion 9.69 24.2
CDY24554 Canola cytosol 4.84 22.22
CDY05786 Canola plastid 14.81 21.44
CDY31943 Canola plastid 14.81 21.44
CDY27647 Canola mitochondrion 11.82 20.39
CDY48421 Canola mitochondrion 11.4 19.37
CDY57695 Canola mitochondrion 16.52 19.24
CDY36566 Canola mitochondrion 15.81 18.47
CDX73880 Canola mitochondrion 13.11 18.36
CDY53324 Canola mitochondrion, plastid 18.95 18.19
CDY39654 Canola mitochondrion 15.53 18.14
CDY09903 Canola mitochondrion 13.68 18.11
CDY06272 Canola mitochondrion 13.53 17.92
CDY53325 Canola mitochondrion 17.81 17.91
CDY66759 Canola cytosol 18.66 17.54
CDX97686 Canola plastid 15.1 17.1
CDY30088 Canola plastid 14.81 16.86
CDX79395 Canola cytosol 17.52 12.0
CDY36565 Canola cytosol 1.28 2.69
Protein Annotations
KEGG:00230+2.7.7.6KEGG:00240+2.7.7.6Gene3D:1.25.40.10Gene3D:2.40.270.10Gene3D:3.90.1800.10MapMan:35.1
GO:A0A078E061EnsemblPlants:CDX94049ProteinID:CDX94049ProteinID:CDX94049.1InterPro:DNA-dir_RNAP_su2_domInterPro:DNA-dir_RNAP_su2_hyb_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003824GO:GO:0003899GO:GO:0005488
GO:GO:0005515GO:GO:0006139GO:GO:0006351GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0016740EnsemblPlantsGene:GSBRNA2T00156942001InterPro:IPR002885InterPro:IPR011990InterPro:IPR037033
PFAM:PF00562PFAM:PF01535PFAM:PF04560PFAM:PF13041PFscan:PS51375PANTHER:PTHR24015
PANTHER:PTHR24015:SF1638InterPro:Pentatricopeptide_repeatInterPro:RNA_pol_Rpb2_7SUPFAM:SSF64484TIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sf
UniParc:UPI0004EEED87:::::
Description
BnaC07g36830D
Coordinates
chrLK031879:-:325338..328521
Molecular Weight (calculated)
79742.1 Da
IEP (calculated)
8.798
GRAVY (calculated)
-0.428
Length
702 amino acids
Sequence
(BLAST)
001: MGKVAAHMGK EGDATPFTDV TVDNISKALH KCGYQMRGFE RMYNGHTGRP LTAMIFLGPT YYQRLKHMVD DKIHSRGRGP VQILTRQPAE GRSRDGGLRF
101: GEMERDCMIA HGAANFVKER LFDQSDAYRV HVCETCGLIA IANLKKNSFE CRGCKNKTDI VQVHIPYACK LLFQELMSMA ITPRILTKGL KSAKGRKEVY
201: FHNREAESPP HFFTMNILRR IPANLFTSRY YYTNRVKKTT LYSKISPLGN PKSSVYPELQ NWVHSGNKVS VAELIRIVHD LRRRKRFLHA LEVSKWMKET
301: GVCIFSPSEH AVHLDLVGRV HGFVSAEAYF ESLKEQHKND KTHGALLNCY VRQLDVEKSL SHFEKMKQLG YASSPLTYNN IMCLYTNIGQ HDKVPRVLDE
401: MKEENVAPDN YSFRICINAF GVMNDLERIG EILRDMETVD WNTYAVAAKF YIDGGDRDKA VELLRMSESR LESKDGEGYS HLITLYARLG DKGEVLRLWE
501: LEKDACKRRI NQDYLTVLQS LVKIDALKEA EEVVKEWESS SGNCYDFRVP SVVIRGYAGR GMEEKAEAML EDLGKRGKGT TPDSWGLVAA AYVEKGVLDN
601: AYKCLKTALG VEVGKRKWRP GVKVVTSVLS WLGNEGSLRE VESFVASLRS CMGVNREMYH ALVKADIREG GSNVDTLLQR MKEDKIETDE ETMAILSTRS
701: HC
Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)
001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC
Arabidopsis Description
Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.