Factsheet for Solyc02g078350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	96.54	96.54
VIT_10s0597g00040.t01	Wine grape	extracellular	59.67	57.91
KRH10858	Soybean	mitochondrion	55.8	56.38
Bra038762.1-P	Field mustard	mitochondrion	49.49	49.8
CDX98698	Canola	mitochondrion	49.29	49.59
AT4G21705.1	Thale cress	mitochondrion	49.08	48.98
GSMUA_Achr1P02980_001	Banana	mitochondrion	49.29	45.66
EER91421	Sorghum	mitochondrion	41.96	41.53
Zm00001d013923_P001	Maize	mitochondrion	41.75	41.0
Os07t0598500-01	Rice	mitochondrion	42.16	40.91
TraesCS1D01G166800.1	Wheat	mitochondrion	41.14	39.53
EER90330	Sorghum	mitochondrion	40.12	39.24
TraesCS1A01G168800.1	Wheat	mitochondrion	40.73	39.14
TraesCS1B01G188100.1	Wheat	mitochondrion	40.53	38.94
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	41.14	38.92
Solyc07g063220.2.1	Tomato	plastid	43.99	38.92
EER90329	Sorghum	mitochondrion	39.1	38.17
CDX94049	Canola	cytosol	48.47	33.9
Solyc07g054100.1.1	Tomato	cytosol	20.37	30.96
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	30.35	30.22
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	29.53	29.9
Solyc11g006380.1.1	Tomato	cytosol	29.94	29.88
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	26.27	28.41
Solyc01g081320.2.1	Tomato	plastid	29.74	28.19
Solyc06g005140.2.1	Tomato	mitochondrion	27.9	26.35
Solyc01g100580.2.1	Tomato	mitochondrion	25.46	25.93
Solyc01g089870.2.1	Tomato	nucleus	28.31	25.5
Solyc10g047370.1.1	Tomato	mitochondrion	19.96	24.56
Solyc06g071900.2.1	Tomato	mitochondrion	21.38	19.63
Solyc12g020050.1.1	Tomato	plastid	24.03	18.91

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4B959
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1638	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF48452	EnsemblPlantsGene:Solyc02g078350.2	EnsemblPlants:Solyc02g078350.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00027680E0

Description

No Description!

Coordinates

chr2:+:43069820..43071880

Molecular Weight (calculated)

56600.1 Da

IEP (calculated)

7.515

GRAVY (calculated)

-0.444

Length

491 amino acids

Sequence
(BLAST)

001: MQVNRRIIQA LTGITNRFYH SDKPKKVSLY SKISPLGNPS CSVTNELDEW VCKGNKIRFA EIQRIILDLR KRKRFGQALE ASEWLKISGI FTFSSTEHAV
101: QLDLIGRVHG FPDAESYFNN LSKEDKNDKT YGALLHCYVR QCQMEKALTH LRKMEEEGVS LSSVAFNDIM SLYTRTGEYE RIPEMLHHMK EIGVQPNNLS
201: YRICINSYGA RSDIEGMERV LNEMENQSFI VMDWNTYAAV ANTYVKEGLN DKANSFLKKA EEKIDNKEGI GYNYLISVHS KLGNKDEVIR LWFLEKSALK
301: RCINRDYINM LEALVRLDSL EEAEQLLKEW ETSGNCYDIR VPYIVIIGYM DKQLYEKAET MLEDISTKGK ILTPNIWGRL AAGYLDKDKF ERAVKCMKVA
401: LSLKKDRKGW KPDPKVIMRI LSLFAENGNV NDAESFFHSL RPIVAVNREM YHALLKSYIA GGKEVESLLN NMRDDNIDEN EETKVILGIN Q

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.