Factsheet for Solyc01g089870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400080049	Potato	cytosol, plastid	97.25	97.25
VIT_15s0021g01300.t01	Wine grape	plastid	62.02	64.14
Bra033215.1-P	Field mustard	mitochondrion	55.6	59.18
AT1G02150.1	Thale cress	mitochondrion	56.88	59.16
CDX90079	Canola	mitochondrion	55.41	58.98
CDY15126	Canola	cytosol, mitochondrion, plastid	55.41	58.98
KRH48889	Soybean	plastid	58.17	58.06
KRH66454	Soybean	plastid	57.8	56.76
GSMUA_AchrUn_...	Banana	cytosol	34.5	50.4
Os04t0544400-00	Rice	plastid	39.82	42.47
TraesCS2A01G391600.1	Wheat	plastid	39.08	42.35
TraesCS2B01G410100.1	Wheat	plastid	39.45	42.32
TraesCS2D01G389900.1	Wheat	plastid	39.45	42.07
EES12592	Sorghum	plastid	39.45	41.75
HORVU2Hr1G093220.7	Barley	mitochondrion	39.82	41.41
Zm00001d002789_P001	Maize	plastid	38.9	41.33
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	25.69	30.84
Solyc07g054100.1.1	Tomato	cytosol	18.17	30.65
Solyc06g005140.2.1	Tomato	mitochondrion	28.99	30.38
Solyc11g006380.1.1	Tomato	cytosol	26.79	29.67
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	26.24	29.48
Solyc01g081320.2.1	Tomato	plastid	27.89	29.34
Solyc10g047370.1.1	Tomato	mitochondrion	21.47	29.32
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	26.42	29.21
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	25.5	28.31
Solyc07g063220.2.1	Tomato	plastid	28.81	28.29
Solyc01g100580.2.1	Tomato	mitochondrion	22.75	25.73
Solyc06g071900.2.1	Tomato	mitochondrion	21.47	21.87
Solyc12g020050.1.1	Tomato	plastid	20.18	17.63

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231
GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4AYS8	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	EnsemblPlantsGene:Solyc01g089870.2
EnsemblPlants:Solyc01g089870.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002761B5B	SEG:seg	:

Description

No Description!

Coordinates

chr1:-:83598079..83601223

Molecular Weight (calculated)

62584.8 Da

IEP (calculated)

7.983

GRAVY (calculated)

-0.522

Length

545 amino acids

Sequence
(BLAST)

001: MLLQPTTTVK PPHQKTEKYV SFSSSLSYSL SFPSGFCNLG GFTKPLMCSK NHHSVISCSS TSQVHSYGTV DYERRPIVKW NAIYKRISMN DGPERGSVSV
101: LNQWENEGKK VTKWELSRVI KELRKFRRYK LAFEVYEWMN NRPERFRLTT SDTAIQLDLI AKVHGISSAE EYFDKLPDTL KDKRIYGSLL NAFVRSRKKE
201: QAESLLDKMR NRGYTDHALP FNVMMTLYMN LKDYDKVESV VSEMKEKRIP LDIYSYNIWL SSCGSQGSIE KMEKVLEQMN LDTDINPNWT TFSTMATMYI
301: KLGQMKKAED SLKSVESRIT GRDRIPYHYL ISLYGSLGKK EDVLRIWKTY QSQFPNIPNL GYHSVISSLV RLDDIEGAEK IYDEWLPVKV HYDPRIGNLL
401: LGYYVRKGFV DKASAFFDQM IGAGGKPNSM TCEILAEGHI RDRRISEALS CLKDAVSSEG SKSWRPKPAT VSSILRLCEQ EDDIQNKEVL LEVLKQVGCL
501: DDEKYMSYIP LSNGSFTSSE REIEKDTSDN DEGSDILLNQ LQESL

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.