CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90079	Canola	mitochondrion	97.46	97.46
AT1G02150.1	Thale cress	mitochondrion	89.06	87.02
VIT_15s0021g01300.t01	Wine grape	plastid	60.94	59.2
PGSC0003DMT400080049	Potato	cytosol, plastid	58.98	55.41
Solyc01g089870.2.1	Tomato	nucleus	58.98	55.41
KRH48889	Soybean	plastid	58.59	54.95
KRH66454	Soybean	plastid	58.2	53.69
GSMUA_AchrUn_...	Banana	cytosol	36.33	49.87
EES12592	Sorghum	plastid	41.41	41.16
Zm00001d002789_P001	Maize	plastid	41.21	41.13
Os04t0544400-00	Rice	plastid	40.43	40.51
TraesCS2A01G391600.1	Wheat	plastid	39.45	40.16
TraesCS2B01G410100.1	Wheat	plastid	39.45	39.76
TraesCS2D01G389900.1	Wheat	plastid	39.65	39.73
HORVU2Hr1G093220.7	Barley	mitochondrion	40.04	39.12
CDY24553	Canola	mitochondrion	18.16	32.29
CDY50357	Canola	mitochondrion	12.3	31.5
CDX99984	Canola	mitochondrion	27.73	29.71
CDY03299	Canola	mitochondrion	27.15	29.39
CDY39781	Canola	mitochondrion	27.34	29.29
CDY35213	Canola	cytosol	2.34	29.27
CDY19721	Canola	mitochondrion	26.95	28.93
CDX91822	Canola	mitochondrion	28.12	28.8
CDX90962	Canola	mitochondrion	28.12	28.74
CDY15237	Canola	mitochondrion	28.71	28.66
CDY65573	Canola	mitochondrion	20.7	28.65
CDX89976	Canola	mitochondrion	28.71	28.54
CDX96239	Canola	mitochondrion	27.34	28.51
CDY34141	Canola	mitochondrion	27.34	28.46
CDY25035	Canola	mitochondrion, plastid	27.15	28.37
CDY46999	Canola	mitochondrion	27.15	28.31
CDX91277	Canola	mitochondrion	28.32	27.94
CDX97288	Canola	mitochondrion	27.93	27.82
CDY35212	Canola	mitochondrion	15.23	27.76
CDX98698	Canola	mitochondrion	25.98	27.25
CDY71968	Canola	plastid	15.43	27.05
CDY05574	Canola	mitochondrion	27.54	26.91
CDY00734	Canola	mitochondrion	9.18	26.55
CDY27645	Canola	mitochondrion	13.28	26.25
CDY44801	Canola	mitochondrion	20.51	25.99
CDY50358	Canola	cytosol	10.55	22.98
CDY48421	Canola	mitochondrion	17.58	21.79
CDY27647	Canola	mitochondrion	17.19	21.62
CDY31943	Canola	plastid	19.53	20.62
CDY05786	Canola	plastid	19.53	20.62
CDY24554	Canola	cytosol	6.05	20.26
CDY09903	Canola	mitochondrion	20.7	20.0
CDY06272	Canola	mitochondrion	20.31	19.62
CDX94049	Canola	cytosol	26.37	19.23
CDY39654	Canola	mitochondrion	20.7	17.64
CDY36566	Canola	mitochondrion	19.92	16.97
CDY57695	Canola	mitochondrion	19.73	16.75
CDY53324	Canola	mitochondrion, plastid	23.83	16.69
CDY53325	Canola	mitochondrion	22.46	16.48
CDX97686	Canola	plastid	19.34	15.97
CDX73880	Canola	mitochondrion	15.43	15.77
CDY30088	Canola	plastid	18.95	15.72
CDY66759	Canola	cytosol	19.92	13.65
CDX79395	Canola	cytosol	19.53	9.76
CDY36565	Canola	cytosol	1.56	2.39

Protein Annotations

EnsemblPlants:CDY15126	EnsemblPlantsGene:GSBRNA2T00085294001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF27
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDY15126	ProteinID:CDY15126.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EF0B16	UniProt:A0A078FPV1	MapMan:35.1	:

Description

BnaC05g00050DBnaC05g00050D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPV1]

Coordinates

chrLK032052:-:10850..12457

Molecular Weight (calculated)

58797.0 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.359

Length

512 amino acids

Sequence
(BLAST)

001: MLLQAVQNRN VPLASSASYS RLPRSRSPVV SVAPLKMRTA IIVCSISQVY GYGTVDYERR PIIQWNAIYK KISLMEKPEL GAASVLNQWE KGGRKLTKWE
101: LCRVVKELRK YKRPNQALEV YDWMNKRDER FRLSASDAAI QLDLIGKVRG ISDAEEFFLS LPDNFKDRRV YGSLLNAYVR AKSREKAEAL IDIMRQKGYA
201: LHPLPFNVMM TLYMNLREYD KVDAMVFEMK QKDIRLDIYS YNIWLSSCAS VEQMEQVYQQ MKSDVSINPN WTTFSTMATM YIKMGETEKA QDALRKVEAR
301: ITGRNRIPYH YLLSLYGSVG NKKELFRVWN VYKSVVPSIP NLGYHALVSS LVRMGDIEAA EKVYEEWLPV KSSYDPRIPN LLMNVYVKND QLDKAQGLFD
401: HMIEMGGKPS PGTWEILADG HTRKRSITEA LACLKEAFSA QGSCNWRPKV LVLSGFFKLC EEESDVISKE TVLELLSQSG HLQDKSYQTL IDAEENDARE
501: TDVLVTQLQD DL

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.