Factsheet for PGSC0003DMT400080049

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 6
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g089870.2.1	Tomato	nucleus	97.25	97.25
VIT_15s0021g01300.t01	Wine grape	plastid	61.65	63.76
AT1G02150.1	Thale cress	mitochondrion	57.06	59.35
Bra033215.1-P	Field mustard	mitochondrion	55.6	59.18
CDX90079	Canola	mitochondrion	55.41	58.98
CDY15126	Canola	cytosol, mitochondrion, plastid	55.41	58.98
KRH48889	Soybean	plastid	57.61	57.51
KRH66454	Soybean	plastid	57.25	56.22
GSMUA_AchrUn_...	Banana	cytosol	34.5	50.4
TraesCS2A01G391600.1	Wheat	plastid	39.63	42.94
Os04t0544400-00	Rice	plastid	40.18	42.86
TraesCS2B01G410100.1	Wheat	plastid	39.82	42.72
TraesCS2D01G389900.1	Wheat	plastid	40.0	42.66
HORVU2Hr1G093220.7	Barley	mitochondrion	40.37	41.98
EES12592	Sorghum	plastid	39.63	41.94
Zm00001d002789_P001	Maize	plastid	38.72	41.13
PGSC0003DMT400031020	Potato	cytosol	8.26	37.82
PGSC0003DMT400092266	Potato	mitochondrion	11.38	33.51
PGSC0003DMT400032340	Potato	mitochondrion	28.81	32.44
PGSC0003DMT400047256	Potato	extracellular	19.08	32.2
PGSC0003DMT400023279	Potato	mitochondrion	28.44	31.31
PGSC0003DMT400058755	Potato	cytosol	22.39	30.89
PGSC0003DMT400004477	Potato	plastid	27.16	30.77
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	26.97	30.75
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	29.54	30.73
PGSC0003DMT400011461	Potato	mitochondrion	22.2	30.25
PGSC0003DMT400002590	Potato	cytosol	27.16	30.08
PGSC0003DMT400077284	Potato	mitochondrion	28.81	29.96
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	26.79	29.32
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	26.05	28.92
PGSC0003DMT400007271	Potato	mitochondrion	22.57	25.47
PGSC0003DMT400031016	Potato	cytosol	14.13	25.33
PGSC0003DMT400069375	Potato	cytosol	20.0	23.0
PGSC0003DMT400022632	Potato	mitochondrion	20.18	17.63
PGSC0003DMT400021596	Potato	mitochondrion	19.63	17.46

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102580180	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1D2X1
PFAM:PF01535	PFAM:PF13812	EnsemblPlantsGene:PGSC0003DMG400031170	PGSC:PGSC0003DMG400031170	EnsemblPlants:PGSC0003DMT400080049	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF27	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000294C513	RefSeq:XP_006347992.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400031170]

Coordinates

chr1:-:68951237..68954779

Molecular Weight (calculated)

62399.5 Da

IEP (calculated)

7.764

GRAVY (calculated)

-0.518

Length

545 amino acids

Sequence
(BLAST)

001: MLLQPTTTVK PPHQKTENYV SFSSSLSYSL SFPSGFCNLG GFTKPLMCSK NHHSVISCSS TPQVHSYGTV DYERRPIVKW NAIYKRISMN DGPERGSVSV
101: LNQWENEGKK VTKWELSRVI KELRKFRRYK LAFEVYEWMN NRPERFRLTT SDTAIQLDLI AKVHGISSAE EYFEKLPDTL KDKRIYGSLL NAFVRSRKKE
201: QAESLLDKMR NRGYTDHALP FNVMMTLYMN LKDYNKVESV VSEMKEKKIP LDIYSYNIWL SSCGSQGSIE KMEKVLEQMN LDTDINPNWT TFSTMATMYI
301: KLGELKKAED SLKSVESRIT GRDRIPYHYL ISLYGSLGKK EEVLRIWKTY QSQFPNIPNL GYHSVISSLV RLDDIEGAEK IYDEWLPVKV HYDPRIGNLL
401: LGYYVRKGFV DKASAFFDQM IGAGGKPNSM TCEILAEGHI RDRRISEALS CLKDAVSTEG SKSWRPKPAT VSSILRLCEQ EDDTQNKEAL LEVLKQVGCL
501: DDEKYMSYIP LSNGTITSSE PEIEKDTSDN GEGSDILLNQ LQESL

Best Arabidopsis Sequence Match ( AT1G02150.1 )
(BLAST)

001: MLLQAAVQNR NVPLASSASY SRLLRCRSPV VSVAALSKKT AAIVCSISQV YGYGTVDYER RPIVQWNAIY KKISLMEKPE LGAASVLNQW EKAGRKLTKW
101: ELCRVVKELR KYKRANQALE VYDWMNNRGE RFRLSASDAA IQLDLIGKVR GIPDAEEFFL QLPENFKDRR VYGSLLNAYV RAKSREKAEA LLNTMRDKGY
201: ALHPLPFNVM MTLYMNLREY DKVDAMVFEM KQKDIRLDIY SYNIWLSSCG SLGSVEKMEL VYQQMKSDVS IYPNWTTFST MATMYIKMGE TEKAEDALRK
301: VEARITGRNR IPYHYLLSLY GSLGNKKELY RVWHVYKSVV PSIPNLGYHA LVSSLVRMGD IEGAEKVYEE WLPVKSSYDP RIPNLLMNAY VKNDQLETAE
401: GLFDHMVEMG GKPSSSTWEI LAVGHTRKRC ISEALTCLRN AFSAEGSSNW RPKVLMLSGF FKLCEEESDV TSKEAVLELL RQSGDLEDKS YLALIDVDEN
501: RTVNNSEIDA HETDALLTQL QDDL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02150 [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.