Factsheet for PGSC0003DMT400004477

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g081320.2.1	Tomato	plastid	91.48	84.94
VIT_18s0001g07000.t01	Wine grape	mitochondrion	55.09	52.79
CDX99984	Canola	mitochondrion	48.23	48.54
CDY19721	Canola	mitochondrion	47.61	48.01
Bra036629.1-P	Field mustard	mitochondrion	47.19	47.59
KRH52991	Soybean	mitochondrion	49.06	47.58
CDY25035	Canola	mitochondrion, plastid	46.99	46.12
Bra020588.1-P	Field mustard	mitochondrion	46.99	46.03
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	46.99	46.03
CDY05574	Canola	mitochondrion	46.36	42.56
KRH62276	Soybean	mitochondrion	50.1	41.91
Os02t0796400-00	Rice	mitochondrion	44.49	41.39
GSMUA_Achr7P12830_001	Banana	mitochondrion	46.36	40.99
TraesCS6B01G391300.1	Wheat	mitochondrion	43.24	40.31
TraesCS6A01G358600.1	Wheat	mitochondrion	43.24	40.23
TraesCS6D01G341400.1	Wheat	mitochondrion	43.45	40.19
Zm00001d052030_P001	Maize	plastid	43.24	39.62
HORVU6Hr1G085430.2	Barley	mitochondrion	43.24	39.32
EES07683	Sorghum	mitochondrion	42.62	38.9
PGSC0003DMT400031020	Potato	cytosol	8.73	35.29
Zm00001d011182_P001	Maize	endoplasmic reticulum	34.1	33.33
PGSC0003DMT400058755	Potato	cytosol	25.78	31.39
PGSC0003DMT400032340	Potato	mitochondrion	30.35	30.17
PGSC0003DMT400002590	Potato	cytosol	30.15	29.47
PGSC0003DMT400047256	Potato	extracellular	19.54	29.1
PGSC0003DMT400011461	Potato	mitochondrion	24.12	29.0
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	28.69	28.11
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	27.65	27.82
PGSC0003DMT400080049	Potato	cytosol, plastid	30.77	27.16
PGSC0003DMT400023279	Potato	mitochondrion	27.86	27.07
PGSC0003DMT400077284	Potato	mitochondrion	29.31	26.91
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	28.9	26.53
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	26.61	25.7
PGSC0003DMT400007271	Potato	mitochondrion	25.78	25.67
PGSC0003DMT400092266	Potato	mitochondrion	9.77	25.41
PGSC0003DMT400031016	Potato	cytosol	15.38	24.34
PGSC0003DMT400069375	Potato	cytosol	19.75	20.04
PGSC0003DMT400021596	Potato	mitochondrion	21.0	16.48
PGSC0003DMT400022632	Potato	mitochondrion	21.21	16.35

Protein Annotations

EnsemblPlants:PGSC0003DMT400004477	EnsemblPlantsGene:PGSC0003DMG402001782	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PGSC:PGSC0003DMG402001782	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
UniParc:UPI0002948E4A	UniProt:M0ZNI1	MapMan:35.1	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG402001782]

Coordinates

chr1:+:67530033..67533543

Molecular Weight (calculated)

55096.6 Da

IEP (calculated)

9.343

GRAVY (calculated)

-0.304

Length

481 amino acids

Sequence
(BLAST)

001: MEIIVHSFGS SWTWRFVLSQ SYSTNKATLI NGSYSGGGDL KKRILKVVSS GVNPTRSVLE NWVDEGRRVC LNELRVIIRQ LMKRRRFGPA LEILNWMETQ
101: HCSQMSPYDY ARRQELIVKE HGRIEAERYF ESLTSTVSLK AASPPLLHCY VEERSTEKAE AFMLKINKLG LALSPHPFNE MMKLYKATSQ YQKVPSVILQ
201: MKQNRITLNV LSYNLWMDAC GELSGVESAE MVYKEMLSNQ NVEVGWSSLA TLANIYKKAG LTDKAVLALK TAEKKISFSN HYPYFFLITQ YASLKNKDGV
301: HRVWDASKAV NSPITCANYM CILSSLVKLG DMREAERTFV EWESQCRTYD IRVSNILLGG YMRNGSVEKA ESLHYRTLEK GGCPNSKTWE ILVEGWIRSQ
401: QMDKAIDALK SGLAALKHYE WRPSPSIVVA ISEYFEETRN FEKAMEFLTT LRHFGPANLQ VYKSLLRMQI SREEVHCTSL K

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.