Factsheet for VIT_18s0001g07000.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52991	Soybean	mitochondrion	56.97	57.66
PGSC0003DMT400004477	Potato	plastid	52.79	55.09
CDY25035	Canola	mitochondrion, plastid	53.59	54.9
CDX99984	Canola	mitochondrion	52.19	54.81
Bra036629.1-P	Field mustard	mitochondrion	51.39	54.09
CDY19721	Canola	mitochondrion	51.39	54.09
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	52.79	53.97
Solyc01g081320.2.1	Tomato	plastid	54.58	52.9
Bra020588.1-P	Field mustard	mitochondrion	51.59	52.75
GSMUA_Achr7P12830_001	Banana	mitochondrion	56.77	52.39
CDY05574	Canola	mitochondrion	52.19	50.0
KRH62276	Soybean	mitochondrion	56.37	49.22
TraesCS6B01G391300.1	Wheat	mitochondrion	49.8	48.45
HORVU6Hr1G085430.2	Barley	mitochondrion	50.0	47.45
Os02t0796400-00	Rice	mitochondrion	48.8	47.39
TraesCS6D01G341400.1	Wheat	mitochondrion	49.0	47.31
TraesCS6A01G358600.1	Wheat	mitochondrion	48.41	47.0
EES07683	Sorghum	mitochondrion	47.01	44.78
Zm00001d052030_P001	Maize	plastid	46.61	44.57
Zm00001d011182_P001	Maize	endoplasmic reticulum	36.06	36.79
VIT_16s0039g02800.t01	Wine grape	cytosol	33.07	33.33
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	31.27	31.15
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.28	30.52
VIT_00s0394g00020.t01	Wine grape	cytosol	29.48	30.27
VIT_10s0597g00040.t01	Wine grape	extracellular	30.28	30.04
VIT_11s0078g00180.t01	Wine grape	cytosol	11.35	29.84
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	29.68	29.74
VIT_15s0021g01300.t01	Wine grape	plastid	30.48	29.03
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	28.69	28.86
VIT_07s0005g01630.t01	Wine grape	mitochondrion	26.69	28.39
VIT_06s0004g04690.t01	Wine grape	mitochondrion	21.71	20.72
VIT_08s0007g05090.t01	Wine grape	mitochondrion	21.12	16.99

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100252393	wikigene:100252393	MapMan:35.1	ProteinID:CCB45620	ProteinID:CCB45620.1
ncoils:Coil	UniProt:F6H0Z8	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100252393	wikigene:LOC100252393	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF578	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00021089B3	ArrayExpress:VIT_18s0001g07000
EnsemblPlantsGene:VIT_18s0001g07000	EnsemblPlants:VIT_18s0001g07000.t01	RefSeq:XP_002283946	RefSeq:XP_002283946.1	RefSeq:XP_002283946.2	SEG:seg

Description

No Description!

Coordinates

chr18:+:5240693..5244484

Molecular Weight (calculated)

57715.8 Da

IEP (calculated)

9.616

GRAVY (calculated)

-0.215

Length

502 amino acids

Sequence
(BLAST)

001: MAFRCLFFTL RRYAYSSRRS ISSKTTPMDE AACTCKRDDL TSRMLKLVFP RRSATAVLQN WIDQGHKVTA SDLRNVSRQL LKSKRHKHAL EILAWMEAQN
101: RFQMSAADHA IRLELIIKIQ SLAEAEEYFE HLPNSSSRKA ACLPLLHAYV KERAIEKAEA LMLKLNDLGL TVSPHPFNEM MKLYMATSQF ERVPTVILQM
201: KQNKIPLNVL SYNLWMSACS EVSGLASAEM VYKDMVDDKN VEVGWSTLST LANIYLKSGL IKKANLALKN AEKKLSAHNR LGYFFLITMY ASLSNKEEVL
301: RLWEASKKVG GRITSTNYMC ILLCLVKLGD IAEAERIFRE WESKCWKYDI RVSNVLLGAY MRTGSMDKAE SLHLHTLERG GCPNYKTWEI LMEGWMKSQN
401: MDKAINAMKK GFSMLKHCDW RPNHGLVTAI ARYLEEHGNV NDLNQYVKVI HQLGVAKLPL YKSLLRMHLL FQRPVFDILK MMEKDEIEMD DETSALVQAF
501: KV

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.