Factsheet for VIT_07s0005g01630.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023279	Potato	mitochondrion	55.93	53.33
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	52.75	51.34
KRH31780	Soybean	mitochondrion	51.48	51.05
KRH69203	Soybean	cytosol	40.04	48.59
Bra033321.1-P	Field mustard	mitochondrion	50.21	46.02
CDY15237	Canola	mitochondrion	50.0	46.0
CDX89976	Canola	mitochondrion	50.0	45.83
AT1G02370.1	Thale cress	mitochondrion	51.06	44.88
AT4G01990.1	Thale cress	mitochondrion	46.4	43.63
Bra000902.1-P	Field mustard	mitochondrion	45.34	42.71
CDX91822	Canola	mitochondrion	45.13	42.6
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	44.92	42.57
CDX90962	Canola	mitochondrion	44.92	42.32
GSMUA_Achr11P...	Banana	mitochondrion	46.19	42.0
VIT_00s0394g00020.t01	Wine grape	cytosol	40.25	38.85
Zm00001d009122_P001	Maize	mitochondrion	42.37	38.84
EES02848	Sorghum	mitochondrion	42.8	38.11
TraesCS2B01G584000.2	Wheat	mitochondrion	44.28	37.79
TraesCS2A01G552700.1	Wheat	mitochondrion	43.43	37.21
Os01t0301000-01	Rice	mitochondrion	41.1	37.16
TraesCS2D01G553300.1	Wheat	mitochondrion	43.64	36.79
TraesCS6B01G118900.1	Wheat	cytosol	32.42	36.78
TraesCS2B01G583500.1	Wheat	mitochondrion	37.29	36.67
TraesCS6D01G079100.1	Wheat	mitochondrion	36.23	35.7
VIT_11s0078g00180.t01	Wine grape	cytosol	14.41	35.6
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	37.5	35.33
TraesCS6B01G119000.1	Wheat	mitochondrion	35.38	34.86
TraesCS6A01G090800.2	Wheat	mitochondrion	35.59	34.85
Os01t0301500-01	Rice	cytosol, mitochondrion	35.59	34.71
Os01t0301700-01	Rice	mitochondrion	36.86	34.52
TraesCS6A01G090900.1	Wheat	mitochondrion	34.96	34.45
TraesCS6A01G091100.1	Wheat	mitochondrion	36.65	34.12
TraesCS6D01G079300.1	Wheat	mitochondrion	36.44	33.79
HORVU6Hr1G016360.7	Barley	mitochondrion	34.96	33.0
TraesCS6B01G119100.1	Wheat	mitochondrion	34.32	32.73
TraesCS2D01G553100.1	Wheat	mitochondrion	37.71	32.66
TraesCS2A01G552100.1	Wheat	mitochondrion	37.92	32.55
TraesCS6A01G091000.1	Wheat	mitochondrion	34.75	32.16
TraesCS6D01G079200.1	Wheat	plastid	35.38	30.87
TraesCS6A01G091200.2	Wheat	cytosol	23.73	30.68
HORVU6Hr1G016390.10	Barley	plastid	35.81	30.4
VIT_16s0039g02800.t01	Wine grape	cytosol	31.36	29.72
VIT_10s0597g00040.t01	Wine grape	extracellular	31.57	29.45
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	30.93	29.26
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	31.14	29.17
VIT_15s0021g01300.t01	Wine grape	plastid	31.78	28.46
TraesCS6D01G079400.1	Wheat	plastid	26.91	28.16
VIT_18s0001g07000.t01	Wine grape	mitochondrion	28.39	26.69
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	27.54	25.95
VIT_06s0004g04690.t01	Wine grape	mitochondrion	22.46	20.15
VIT_08s0007g05090.t01	Wine grape	mitochondrion	22.46	16.99

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100243538	wikigene:100243538	MapMan:35.1	ProteinID:CCB60022	ProteinID:CCB60022.1
ncoils:Coil	UniProt:F6HZA7	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100243538	wikigene:LOC100243538	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CA3D3
ArrayExpress:VIT_07s0005g01630	EnsemblPlantsGene:VIT_07s0005g01630	EnsemblPlants:VIT_07s0005g01630.t01	unigene:Vvi.14436	RefSeq:XP_003632411	RefSeq:XP_003632411.1
RefSeq:XP_003632411.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7:+:4118382..4126066

Molecular Weight (calculated)

53875.9 Da

IEP (calculated)

6.994

GRAVY (calculated)

-0.261

Length

472 amino acids

Sequence
(BLAST)

001: MMARNPNRLI SAGAGLARRL CTAAAATEPE EVAVQAASRS VRQPRLYHRL SALGATGGSV ADTLNEHIKE GKLIAKHELS SCIKQLRKYR QFQHALEIMD
101: WMENRKIFFS YADYAVRLDL LSKTKGLATA EEYFNNLSPS AKNLLTYGTL LNCYCKEKME EKALALFEKM DELNFASTSL TFNNLMSLHM RLGKPEMVPP
201: LVDEMKKRSI SPDTFTYNIL MQSYARLNDI EGAERVLEEI KRENEDKLSW TTYSNLAAVY VNARLFEKAE LALKKLEEEM GFHDRLAYHF LISLYAGINN
301: LSEVNRVWNS LKSAFPKTNN MSYFIMLQAL ANLNDVDGLK ICFEEWKSSC FSFDVRLANV AVRAFLGWDM IKDAESILYE AVKRSSGPFY TALDMFMAHH
401: LKVREIDTAL KYMEAAASEV KNNEWQPAPE RVLAFLKYFE EEKDVEGAEK FCKILKNISG LDSNAYQLLL QT

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.