Factsheet for GSMUA_Achr11P05060_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009122_P001	Maize	mitochondrion	51.83	52.23
Os01t0301000-01	Rice	mitochondrion	52.02	51.72
TraesCS2B01G584000.2	Wheat	mitochondrion	54.72	51.36
TraesCS2A01G552700.1	Wheat	mitochondrion	54.34	51.18
TraesCS2D01G553300.1	Wheat	mitochondrion	55.11	51.07
EES02848	Sorghum	mitochondrion	51.83	50.75
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	46.44	48.1
VIT_07s0005g01630.t01	Wine grape	mitochondrion	42.0	46.19
PGSC0003DMT400023279	Potato	mitochondrion	42.0	44.04
Os01t0301500-01	Rice	cytosol, mitochondrion	38.92	41.74
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	38.92	41.65
Bra033321.1-P	Field mustard	mitochondrion	40.46	40.78
AT4G01990.1	Thale cress	mitochondrion	39.11	40.44
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	38.73	40.36
CDX89976	Canola	mitochondrion	39.88	40.19
CDY15237	Canola	mitochondrion	39.5	39.96
CDX91822	Canola	mitochondrion	38.34	39.8
KRH69203	Soybean	cytosol	29.67	39.59
KRH31780	Soybean	mitochondrion	35.84	39.08
CDX90962	Canola	mitochondrion	37.57	38.92
Bra000902.1-P	Field mustard	mitochondrion	37.38	38.72
AT1G02370.1	Thale cress	mitochondrion	39.31	37.99
GSMUA_Achr1P16170_001	Banana	cytosol	35.07	37.37
PGSC0003DMT400007271	Potato	mitochondrion	32.76	35.2
Solyc01g100580.2.1	Tomato	mitochondrion	31.98	34.44
GSMUA_AchrUn_...	Banana	cytosol	23.31	32.44
GSMUA_Achr1P17120_001	Banana	mitochondrion	30.25	30.19
GSMUA_Achr1P02980_001	Banana	mitochondrion	30.25	29.62
GSMUA_Achr5P20750_001	Banana	mitochondrion	29.09	27.66
GSMUA_Achr7P12830_001	Banana	mitochondrion	27.36	26.1
GSMUA_Achr10P...	Banana	cytosol	20.62	24.26
GSMUA_Achr5P27560_001	Banana	cytosol	21.19	21.44
GSMUA_Achr8P21680_001	Banana	mitochondrion	23.31	19.58
GSMUA_Achr9P23230_001	Banana	mitochondrion	19.46	19.35
GSMUA_Achr11P...	Banana	mitochondrion	20.62	17.04

Protein Annotations

EnsemblPlants:GSMUA_Achr11P05060_001	EnsemblPlants:GSMUA_Achr11T05060_001	EnsemblPlantsGene:GSMUA_Achr11G05060_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI000295E98E	UniProt:M0RPI6	MapMan:35.1	:	:

Description

Putative Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr11G05060_001]

Coordinates

chr11:-:3797827..3800903

Molecular Weight (calculated)

58928.1 Da

IEP (calculated)

9.286

GRAVY (calculated)

-0.404

Length

519 amino acids

Sequence
(BLAST)

001: MAKSPMRPLL WAMAAARRRL FTASAASSPS PSPSSSSAEA RASEVGERKE SKPLYRRLSA LGRAPAGSVT KTLNKWLREG RTVTATQLMK YVKELRKYNR
101: YSHALELMEW MSGTRGMNIS YTNHAIRLDL ISKVKGTESA EEYFSQLPEP AKNERTYGSL LNCYCSGKNA DKAISLYNHM KDRNIASSTL VHNNLMSLYM
201: KLGQPENAIT QFQEMKSKNI VPDNLTCCIL MNCYASLNDI VSVESVIKEM EEGGEVTLQW SAYSTLAAIY SSAGMATKAE SALKQLEGLV DKRDWMPFHF
301: LISLYAGIGK LGEVKRIWMS LKEVYSNPIN MSYLKMLQAL SKLDDIHGLK LLYEEWESGY TAYDLRLTNL MIGTYLKKDM IREAESIWQK ASERGAVPDF
401: WTCDRFLDYS LKNKDTGLAL RWLETATSMV KQDEWKLNED KVDAFLKAFE EAKDVEGLEE FCKSLRRLKC LDLNAYEALL RTYLAAGKKN PGLHRRIKDD
501: KIKISSETKK LLQWVCATN

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.