Factsheet for GSMUA_Achr9P23230_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069375	Potato	cytosol	58.81	64.77
Zm00001d024521_P001	Maize	mitochondrion	62.84	63.81
TraesCS7D01G293300.1	Wheat	mitochondrion	62.64	63.74
TraesCS7A01G296400.1	Wheat	mitochondrion	61.11	62.18
TraesCS7B01G189100.1	Wheat	mitochondrion	60.92	61.99
VIT_06s0004g04690.t01	Wine grape	mitochondrion	60.92	60.46
KRH10262	Soybean	mitochondrion	58.05	59.76
KRH23068	Soybean	mitochondrion	57.47	59.17
Solyc06g071900.2.1	Tomato	mitochondrion	59.0	57.57
HORVU7Hr1G066420.6	Barley	plastid	56.7	56.27
OQU79953	Sorghum	cytosol	64.37	53.76
CDY09903	Canola	mitochondrion	54.21	53.4
AT1G07590.1	Thale cress	mitochondrion	54.6	53.37
CDY06272	Canola	mitochondrion	53.45	52.64
Bra031586.1-P	Field mustard	mitochondrion	53.45	52.54
GSMUA_Achr5P27560_001	Banana	cytosol	22.99	23.39
GSMUA_Achr1P16170_001	Banana	cytosol	21.07	22.59
GSMUA_AchrUn_...	Banana	cytosol	15.71	21.98
GSMUA_Achr5P20750_001	Banana	mitochondrion	21.65	20.7
GSMUA_Achr1P02980_001	Banana	mitochondrion	20.88	20.57
GSMUA_Achr1P17120_001	Banana	mitochondrion	20.11	20.19
GSMUA_Achr10P...	Banana	cytosol	17.05	20.18
GSMUA_Achr11P...	Banana	mitochondrion	19.35	19.46
GSMUA_Achr8P21680_001	Banana	mitochondrion	22.99	19.42
GSMUA_Achr7P12830_001	Banana	mitochondrion	18.58	17.83
GSMUA_Achr11P...	Banana	mitochondrion	20.31	16.88

Protein Annotations

EnsemblPlants:GSMUA_Achr9P23230_001	EnsemblPlants:GSMUA_Achr9T23230_001	EnsemblPlantsGene:GSMUA_Achr9G23230_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0008150	GO:GO:0046686	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat
InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF588	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0002960D6B	UniProt:M0U2T2	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr9G23230_001]

Coordinates

chr9:-:28152156..28156085

Molecular Weight (calculated)

60035.0 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.204

Length

522 amino acids

Sequence
(BLAST)

001: MQLVFRRLPL RLHSICGTFA RSFVTTSAAL PVFSEFDVLA QEEAAGHGEE QPRGSLSSRV ERLPKGESVA LAFQNWMGEG SAVDRGEIFH AVNRLRKRKM
101: NRRALEVMEW VVRERPYKLS ELDYSYLLEF TTKIHGISQA ESLFLRIPHN YQNVLLYNNL VMACLDKGLI RLSLAYMRKM RELDFPISPY VYNRLILLHS
201: SSSRKKTIPK ILIQMKADGV SPHVSTYNIL LKIEADEHNL EGLSKVFNDM KRAKVEPNEI TYGILAMAHA VARLYTISET YVEAIERSRT DNNWSTLDIL
301: LILYGYLGKE EELQITWKCV KELPYVRTKS FILAIEAFGR GSSVDIAEEI FAEMKSIKQL KTTKQFNSII SVYCRNGLVD KASEVFKEME ANGCRPNAIT
401: YRHLALGCLK AGLWDEALKT MNLGKNEDLS FRVRRSTPWL ETTHMLLEVF ADMGDLEKAK SLFKEFKETK YCRYTFVHNT LLRAYVKARV YDSEILRKMI
501: LAGASPDAET YSLVRFIEQF KS

Best Arabidopsis Sequence Match ( AT1G07590.1 )
(BLAST)

001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.