Factsheet for GSMUA_Achr8P21680_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P27560_001	Banana	cytosol	56.47	68.03
KRH66764	Soybean	cytosol	40.94	60.96
TraesCS3B01G220600.2	Wheat	mitochondrion	56.15	56.61
TraesCS3D01G195000.1	Wheat	mitochondrion	55.99	56.44
TraesCS3A01G191200.1	Wheat	mitochondrion	55.83	56.37
VIT_08s0007g05090.t01	Wine grape	mitochondrion	56.8	56.25
Os12t0170100-01	Rice	mitochondrion	55.34	55.97
HORVU3Hr1G040710.1	Barley	mitochondrion	55.34	55.88
Os01t0280400-00	Rice	mitochondrion	55.18	55.81
KRH69049	Soybean	mitochondrion	54.37	55.17
GSMUA_Achr11P...	Banana	mitochondrion	55.5	54.62
KRG95098	Soybean	mitochondrion	53.88	54.59
OQU86720	Sorghum	mitochondrion	54.05	54.49
Zm00001d040475_P001	Maize	mitochondrion	53.4	53.83
KRH31614	Soybean	mitochondrion	52.27	53.83
Zm00001d008224_P002	Maize	mitochondrion	53.72	53.38
CDY57695	Canola	mitochondrion	51.46	52.74
AT1G80270.2	Thale cress	mitochondrion	50.81	52.68
AT1G15480.1	Thale cress	mitochondrion	49.68	51.68
Solyc12g020050.1.1	Tomato	plastid	51.94	51.44
PGSC0003DMT400022632	Potato	mitochondrion	51.94	51.44
CDY39654	Canola	mitochondrion	49.84	51.25
PGSC0003DMT400021596	Potato	mitochondrion	47.09	47.47
Bra003559.1-P	Field mustard	cytosol	51.29	44.52
Bra027226.1-P	Field mustard	plastid	43.04	44.19
AT3G15590.2	Thale cress	cytosol, mitochondrion	43.37	43.93
CDX97686	Canola	plastid	42.56	42.42
CDY30088	Canola	plastid	42.07	42.14
Bra026128.1-P	Field mustard	cytosol	49.84	33.08
CDX79395	Canola	cytosol	51.29	30.93
GSMUA_Achr1P17120_001	Banana	mitochondrion	22.98	27.31
GSMUA_Achr1P16170_001	Banana	cytosol	19.42	24.64
GSMUA_Achr1P02980_001	Banana	mitochondrion	20.55	23.96
GSMUA_Achr11P...	Banana	mitochondrion	19.58	23.31
GSMUA_Achr9P23230_001	Banana	mitochondrion	19.42	22.99
GSMUA_AchrUn_...	Banana	cytosol	13.59	22.52
GSMUA_Achr5P20750_001	Banana	mitochondrion	18.93	21.43
GSMUA_Achr10P...	Banana	cytosol	14.72	20.63
GSMUA_Achr7P12830_001	Banana	mitochondrion	17.8	20.22

Protein Annotations

EnsemblPlants:GSMUA_Achr8P21680_001	EnsemblPlants:GSMUA_Achr8T21680_001	EnsemblPlantsGene:GSMUA_Achr8G21680_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF26	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	UniParc:UPI000294D10C	UniProt:M0TSH1	MapMan:16.12.5.4.19	:	:

Description

Pentatricopeptide repeat-containing protein At1g80270, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr8G21680_001]

Coordinates

chr8:-:26496941..26501007

Molecular Weight (calculated)

69709.6 Da

IEP (calculated)

6.635

GRAVY (calculated)

-0.411

Length

618 amino acids

Sequence
(BLAST)

001: MWALRRALNP MRGNCNVVAR CCRMNLHVAS SSIDNGECHC EEAGINRSFI PSKSVSCGPI SLRSFVWSRN LSSQVGQKSS DKEDDLEDGF SDLEEPPESA
101: EVNNGSDKED KELMSEGELS EESDEAADNS LGLLAVESTS SEVKGPQRRT LYSPLFKTIM DSPRQSLTSA LNKWAEEGKP LGREEISSAM LNLRKRRLYV
201: TALQFTEWLE ANGHIDFIER DYASHLDLIA KVSGLQKAEK YIEKIPESFR SEVVYRTLLA NCAGAVNVKK AEEVFNKIRD LGFPISAFAC NQLLLLYKRL
301: DRKKIADVLL MMEKENVKPT LFTYKILIDT KGRANDISGM EQIVETMKAE GMEPDIMTQA MVARYYIFAG LNEKAEAALK EMEGDDFKEN RNVCKVLLPL
401: YAALGKVDDV GRVWKVCEAN PRLDECLAAI EAWDKLGQIE TAEEVFENIS KKWKLSSKYY NAMLKVYANN KLLTKGKELV KRMSNSGCRI GPLTWDALVK
501: LYVEAGEVEK ADSILQKAAQ QNQNRLLLSS YMAVMDHYSN RGDVHNAEKI FHRLRQVGYI GRMRQYQSLL QAYVNAKTPA YGFRERMKAD NMFPNKALAA
601: QLAAIDAFKK TPFSELLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.