CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66764	Soybean	cytosol	63.77	93.73
KRH31614	Soybean	mitochondrion	60.98	62.0
KRH69049	Soybean	mitochondrion	60.82	60.92
VIT_08s0007g05090.t01	Wine grape	mitochondrion	56.89	55.61
GSMUA_Achr8P21680_001	Banana	mitochondrion	54.59	53.88
GSMUA_Achr5P27560_001	Banana	cytosol	44.59	53.02
PGSC0003DMT400022632	Potato	mitochondrion	53.77	52.56
Solyc12g020050.1.1	Tomato	plastid	53.28	52.08
AT1G80270.2	Thale cress	mitochondrion	50.33	51.51
CDY57695	Canola	mitochondrion	50.66	51.24
AT1G15480.1	Thale cress	mitochondrion	48.03	49.33
CDY39654	Canola	mitochondrion	47.87	48.59
HORVU3Hr1G040710.1	Barley	mitochondrion	47.21	47.06
TraesCS3D01G195000.1	Wheat	mitochondrion	47.21	46.98
TraesCS3B01G220600.2	Wheat	mitochondrion	47.05	46.82
OQU86720	Sorghum	mitochondrion	47.05	46.82
Os12t0170100-01	Rice	mitochondrion	46.89	46.81
Os01t0280400-00	Rice	mitochondrion	46.89	46.81
TraesCS3A01G191200.1	Wheat	mitochondrion	46.72	46.57
PGSC0003DMT400021596	Potato	mitochondrion	46.39	46.17
Zm00001d040475_P001	Maize	mitochondrion	46.39	46.17
Zm00001d008224_P002	Maize	mitochondrion	46.89	45.98
GSMUA_Achr11P...	Banana	mitochondrion	45.41	44.11
AT3G15590.2	Thale cress	cytosol, mitochondrion	43.93	43.93
Bra003559.1-P	Field mustard	cytosol	50.33	43.12
Bra027226.1-P	Field mustard	plastid	42.3	42.86
CDY30088	Canola	plastid	40.82	40.36
CDX97686	Canola	plastid	40.66	40.0
Bra026128.1-P	Field mustard	cytosol	47.05	30.83
CDX79395	Canola	cytosol	49.84	29.66
KRH10858	Soybean	mitochondrion	20.49	25.72
KRH45616	Soybean	nucleus	18.36	22.86
KRH55328	Soybean	plastid	18.36	22.76
KRH22399	Soybean	cytosol	17.7	22.69
KRH43872	Soybean	mitochondrion	14.59	22.53
KRH26940	Soybean	cytosol	18.03	22.18
KRH48889	Soybean	plastid	19.67	21.98
KRH10583	Soybean	mitochondrion	14.26	21.8
KRH10262	Soybean	mitochondrion	18.03	21.7
KRH69203	Soybean	cytosol	13.61	21.34
KRH31780	Soybean	mitochondrion	16.56	21.22
KRH23068	Soybean	mitochondrion	17.54	21.1
KRG99413	Soybean	cytosol, mitochondrion	12.13	21.08
KRH66454	Soybean	plastid	19.02	20.9
KRH52991	Soybean	mitochondrion	16.23	19.96
KRH62276	Soybean	mitochondrion	16.72	17.74

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100500196	MapMan:16.12.5.4.19	EMBL:ACUP02012078	EnsemblPlantsGene:GLYMA_19G129900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009536	GO:GO:0009941
GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	UniProt:I1N8R7	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlants:KRG95098	ProteinID:KRG95098	ProteinID:KRG95098.1	PFAM:PF01535	PFAM:PF17177	InterPro:PPR_long
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF26	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00023DD46D	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:38942820..38947011

Molecular Weight (calculated)

69503.5 Da

IEP (calculated)

6.617

GRAVY (calculated)

-0.475

Length

610 amino acids

Sequence
(BLAST)

001: MWALRRASIP LRTRGFNVRA SCVKLAGTSS VEEEDVINES HGITYGGFLS PNMRFHSVHN ASLNFTVGKR ALSSSSTKEE DDLEDGFSEL EMPAGSGYES
101: EDLLTSDDGD LSDDGQKEDV EEPPHNEVDE AAKEKGNPRR GRVESKLFNE IMNAQGISLH SVLEKWLEKG NELTREEVSL AMLYLRKRKL FGRALLLSEW
201: LESKKEFEFI ERDYASRLDL IAKLRGLHKA EVYIETIPES CSREIMYRTL LANCVSQNNV KKAEEVFSKM KDLDFPITVF TCNQLLFLYK RNDRKKIADV
301: LLLMENENIN PSSHTYSILI DTKGQSKDID GMDQIVDRMK AQGIEPDINT QAVLIRHYIS SGLQDKAETL LKEMEGENLK QNRWLCRILL PLYANLGKVD
401: EVGRIWKVCE TNPRYDECLG AIEAWGKLNK IDEAEKVFEI MVKKWKLSSK TCSILLKVYA NNKMLMKGKD LIKRMGDGGC RIGPLTWDAI VKLYVQAGEV
501: EKADSVLQKA AQQSQMKPIF STYLTILEQY ANRGDIHNSE KIFLRMKQAD YPSKAKMYQV LMNAYINAKV PAYGIRDRLR ADSIYPNRNL ANQLVQVDGF
601: RKNPVSDLLD

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.