CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45616	Soybean	nucleus	86.89	62.24
CDY24554	Canola	cytosol	21.65	49.67
VIT_00s0394g00020.t01	Wine grape	cytosol	68.09	48.88
PGSC0003DMT400002590	Potato	cytosol	63.82	45.53
Solyc11g006380.1.1	Tomato	cytosol	63.53	45.33
CDY50357	Canola	mitochondrion	24.5	43.0
CDY34141	Canola	mitochondrion	60.11	42.89
AT1G60770.1	Thale cress	cytosol	59.83	42.77
CDY50358	Canola	cytosol	28.49	42.55
Bra031484.1-P	Field mustard	mitochondrion	59.54	42.48
CDX96239	Canola	mitochondrion	58.12	41.55
Bra027131.1-P	Field mustard	mitochondrion	57.55	41.14
CDY46999	Canola	mitochondrion	57.55	41.14
GSMUA_Achr1P16170_001	Banana	cytosol	56.98	41.07
CDY24553	Canola	mitochondrion	30.77	37.5
Os04t0320200-01	Rice	mitochondrion	54.42	36.45
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	55.27	36.13
TraesCS4A01G428500.1	Wheat	mitochondrion	54.99	35.81
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.7	35.75
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	54.99	35.03
EER87766	Sorghum	cytosol	52.71	34.51
Zm00001d045492_P004	Maize	cytosol	53.85	31.71
KRH69203	Soybean	cytosol	31.34	28.28
KRH31780	Soybean	mitochondrion	32.48	23.95
KRH52991	Soybean	mitochondrion	26.21	18.55
KRH10858	Soybean	mitochondrion	25.36	18.31
KRH55328	Soybean	plastid	25.07	17.89
KRH22399	Soybean	cytosol	23.93	17.65
KRH26940	Soybean	cytosol	24.22	17.14
KRH66764	Soybean	cytosol	20.23	17.11
KRH48889	Soybean	plastid	26.5	17.03
KRH66454	Soybean	plastid	26.5	16.76
KRH43872	Soybean	mitochondrion	18.8	16.71
KRH10583	Soybean	mitochondrion	18.23	16.04
KRH62276	Soybean	mitochondrion	25.36	15.48
KRH23068	Soybean	mitochondrion	20.8	14.4
KRH10262	Soybean	mitochondrion	20.23	14.0
KRH69049	Soybean	mitochondrion	21.65	12.48
KRH31614	Soybean	mitochondrion	21.08	12.33
KRG95098	Soybean	mitochondrion	21.08	12.13

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02011051	EnsemblPlantsGene:GLYMA_18G143000	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K7MS33	EnsemblPlants:KRG99413	ProteinID:KRG99413	ProteinID:KRG99413.1	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000295A5C4	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:22695740..22699215

Molecular Weight (calculated)

40378.2 Da

IEP (calculated)

8.699

GRAVY (calculated)

-0.388

Length

351 amino acids

Sequence
(BLAST)

001: MLMQRYGRHK SVVKRSKKYL EEAQMGETMA KRNMIKTVRD HAIHLDLLAK ARGITAAKNY FVNLPESAKN HLCHGAILNC YCKEPMIEKA EGFMEKMKEL
101: SLPLSSMPYN SLIMLYTKVG QPEKVSSLIQ EMKTSNIMLD SYTYNVWMRA LAAVNDISSV ERVHDEMNNL YEVFRVWRSL RLAFPKTANI SYLNMIRVLE
201: CGCPTYDIRV VNVLIRAYAK LDMLEKAEEL KEHARRRGAK PNGKTLEIFM DYYLQKGNFK STVDCLDEAI SMGRWNGEKN FEQEKDVDGA EEFLEILKKS
301: MESPGVEVFE SLTRTYAATG RISSAMLRRL KMENVQVSEG TQKLLEAISE E

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.