Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G428500.1 | Wheat | mitochondrion | 97.77 | 97.4 |
| HORVU7Hr1G011310.1 | Barley | cytosol, mitochondrion, nucleus | 97.39 | 94.92 |
| Os04t0320200-01 | Rice | mitochondrion | 83.99 | 86.07 |
| EER87766 | Sorghum | cytosol | 82.5 | 82.65 |
| Zm00001d045492_P004 | Maize | cytosol | 81.56 | 73.49 |
| GSMUA_Achr1P16170_001 | Banana | cytosol | 64.8 | 71.46 |
| CDY24553 | Canola | mitochondrion | 34.82 | 64.93 |
| VIT_00s0394g00020.t01 | Wine grape | cytosol | 56.24 | 61.76 |
| KRH45616 | Soybean | nucleus | 55.68 | 61.02 |
| CDY50357 | Canola | mitochondrion | 22.72 | 61.0 |
| CDX96239 | Canola | mitochondrion | 55.12 | 60.29 |
| CDY46999 | Canola | mitochondrion | 55.12 | 60.29 |
| AT1G60770.1 | Thale cress | cytosol | 54.93 | 60.08 |
| Bra027131.1-P | Field mustard | mitochondrion | 54.56 | 59.67 |
| CDY34141 | Canola | mitochondrion | 54.19 | 59.15 |
| Bra031484.1-P | Field mustard | mitochondrion | 54.0 | 58.94 |
| Solyc11g006380.1.1 | Tomato | cytosol | 54.0 | 58.94 |
| PGSC0003DMT400002590 | Potato | cytosol | 53.63 | 58.54 |
| KRG99413 | Soybean | cytosol, mitochondrion | 35.75 | 54.7 |
| CDY50358 | Canola | cytosol | 22.91 | 52.34 |
| CDY24554 | Canola | cytosol | 13.97 | 49.02 |
| TraesCS6A01G091200.2 | Wheat | cytosol | 23.65 | 34.79 |
| TraesCS6A01G091100.1 | Wheat | mitochondrion | 31.84 | 33.73 |
| TraesCS6A01G090900.1 | Wheat | mitochondrion | 28.86 | 32.36 |
| TraesCS2A01G552700.1 | Wheat | mitochondrion | 32.96 | 32.12 |
| TraesCS6A01G091000.1 | Wheat | mitochondrion | 30.35 | 31.96 |
| TraesCS6A01G090800.2 | Wheat | mitochondrion | 28.49 | 31.74 |
| TraesCS2A01G391600.1 | Wheat | plastid | 27.93 | 29.82 |
| TraesCS1A01G168800.1 | Wheat | mitochondrion | 27.75 | 29.16 |
| TraesCS2A01G552100.1 | Wheat | mitochondrion | 29.24 | 28.55 |
| TraesCS5A01G099700.1 | Wheat | mitochondrion | 25.51 | 26.86 |
| TraesCS6A01G358600.1 | Wheat | mitochondrion | 24.95 | 25.92 |
| TraesCS2A01G318100.1 | Wheat | mitochondrion | 18.44 | 23.63 |
| TraesCS1A01G168700.1 | Wheat | mitochondrion | 24.58 | 22.6 |
| TraesCS3A01G191200.1 | Wheat | mitochondrion | 22.91 | 20.1 |
| TraesCS7A01G296400.1 | Wheat | mitochondrion | 18.62 | 19.49 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G061300.1 | EnsemblPlantsGene:TraesCS7A01G061300 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF494 |
| PFAM:PF01535 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7A:+:30137240..30141068
Molecular Weight (calculated)
61368.1 Da
IEP (calculated)
9.505
GRAVY (calculated)
-0.526
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MATATRAKDL ARRSPKKYVE EALYRRLFRR GSTPQAVREE VDGFLGSRKR AFKWEVGVCV RRLRRQELYR PALKLTEVMT RRGMNPTVGD QAIRLDLVAK
101: SRGIAAAEKY FMDLPETSKT HLTYGALLNC YCKELMTEKA GSLMEKMKEL NFAFTAMSYN SLMTLYTKVN QPEMVPSIIQ DMKADDVLPD VYTYNVWMRS
201: LAARQDILGV ERVIEEMTRD GRVAPDWTTY SNLASIYVDA GLPEKAEAAL KELEKRNTGS DLEAYQFLIT LYGRTQNLVE VHRVWRSLKR NNPRKANMSY
301: LNMIQVLANL KDLPAAEACF KEWEARYIRP PKTKATDAVT TETSKLEEEA STEASNNDSD VKETEDKGTE ELDLKRPKYD IRVANALMKA YVTEGMLDKA
401: IALKKRAKMR GGRLNAKTWE IFMEHYLKVG DLKNAHWCAD RAIKKGHSSG RIWVPPHDVT ETLMGYFEKK KDVDGAESFV EVLKKVQKDL GTVVFEPLVR
501: TYAAAGKKFP GMRHRLKIEN VELSEETDKL VDSICVD
101: SRGIAAAEKY FMDLPETSKT HLTYGALLNC YCKELMTEKA GSLMEKMKEL NFAFTAMSYN SLMTLYTKVN QPEMVPSIIQ DMKADDVLPD VYTYNVWMRS
201: LAARQDILGV ERVIEEMTRD GRVAPDWTTY SNLASIYVDA GLPEKAEAAL KELEKRNTGS DLEAYQFLIT LYGRTQNLVE VHRVWRSLKR NNPRKANMSY
301: LNMIQVLANL KDLPAAEACF KEWEARYIRP PKTKATDAVT TETSKLEEEA STEASNNDSD VKETEDKGTE ELDLKRPKYD IRVANALMKA YVTEGMLDKA
401: IALKKRAKMR GGRLNAKTWE IFMEHYLKVG DLKNAHWCAD RAIKKGHSSG RIWVPPHDVT ETLMGYFEKK KDVDGAESFV EVLKKVQKDL GTVVFEPLVR
501: TYAAAGKKFP GMRHRLKIEN VELSEETDKL VDSICVD
001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.