Factsheet for Bra031484.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24554	Canola	cytosol	30.89	99.35
CDY24553	Canola	mitochondrion	57.93	98.96
Bra027131.1-P	Field mustard	mitochondrion	90.45	90.63
AT1G60770.1	Thale cress	cytosol	85.98	86.15
VIT_00s0394g00020.t01	Wine grape	cytosol	65.65	66.05
KRH45616	Soybean	nucleus	64.23	64.49
PGSC0003DMT400002590	Potato	cytosol	64.02	64.02
Solyc11g006380.1.1	Tomato	cytosol	63.62	63.62
GSMUA_Achr1P16170_001	Banana	cytosol	60.16	60.78
KRG99413	Soybean	cytosol, mitochondrion	42.48	59.54
Os04t0320200-01	Rice	mitochondrion	59.76	56.11
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.15	54.19
TraesCS4A01G428500.1	Wheat	mitochondrion	59.35	54.17
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.94	54.0
EER87766	Sorghum	cytosol	58.54	53.73
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	58.94	52.63
Zm00001d045492_P004	Maize	cytosol	59.15	48.83
Bra033321.1-P	Field mustard	mitochondrion	36.59	34.95
Bra000902.1-P	Field mustard	mitochondrion	35.37	34.73
Bra038762.1-P	Field mustard	mitochondrion	29.27	29.51
Bra033215.1-P	Field mustard	mitochondrion	27.85	26.76
Bra018528.1-P	Field mustard	mitochondrion	27.85	26.65
Bra036629.1-P	Field mustard	mitochondrion	25.81	26.62
Bra028632.1-P	Field mustard	mitochondrion	21.75	26.49
Bra020588.1-P	Field mustard	mitochondrion	26.22	26.27
Bra036673.1-P	Field mustard	mitochondrion	24.39	25.1
Bra011054.1-P	Field mustard	mitochondrion	17.28	24.93
Bra031586.1-P	Field mustard	mitochondrion	23.37	21.66
Bra027226.1-P	Field mustard	plastid	23.37	19.1
Bra032863.1-P	Field mustard	mitochondrion	15.04	18.5
Bra032862.1-P	Field mustard	mitochondrion	14.02	18.21
Bra003559.1-P	Field mustard	cytosol	24.39	16.85
Bra036496.1-P	Field mustard	plastid	16.46	16.7
Bra001400.1-P	Field mustard	mitochondrion, plastid	22.76	14.95
Bra032865.1-P	Field mustard	cytosol	17.28	14.81
Bra026128.1-P	Field mustard	cytosol	27.03	14.29
Bra032866.1-P	Field mustard	mitochondrion	14.23	10.97

Protein Annotations

EnsemblPlants:Bra031484.1	EnsemblPlants:Bra031484.1-P	EnsemblPlantsGene:Bra031484	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF494	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0002544E46	UniProt:M4ERQ8	MapMan:35.1	:

Description

AT1G60770 (E=8e-239) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA01:+:17023997..17025551

Molecular Weight (calculated)

55817.5 Da

IEP (calculated)

9.421

GRAVY (calculated)

-0.427

Length

492 amino acids

Sequence
(BLAST)

001: MALRHLSRPR DIVKRSTKKY LDEPLYHRLF KDGGSEVSVR QQLNQFLKGT KHVFKWEVGD TIKKLRSRGL YYPALKLSQV MEHRGMNKTV SDQAIHLDLV
101: AKARGIAAGE TYFVNLPETS KTELTYASLL NCYCKELMTE KAEGLLNKMK ELNITVSSMS YNSLMTLYTK TGHAERVPGM VQEMKAENVM PDSYTYNVWM
201: RALAATDDVS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DARLSEKAEK ALQELEMKNT DRDFKAYQFL VTLYGRLGKL SEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV NLKDVTGAET LFKEWQANCT TYDIRVVNVM IGAYAKEGLI EKAKELKEKA PRRGGKPNAK TWEIFMDYYV KSGDTAQALE CISKAVSIGK
401: GDGGKWLPSQ EAISTLMSQF EVKKDVNGAE NLLEIFKKGT DDSIGAEIFE SLVRTYAAAG KSHPAMRQRL KMEKVEVNEA TQKLLDALCR QE

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.