Factsheet for Bra020588.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05574	Canola	mitochondrion	93.89	87.98
Bra036629.1-P	Field mustard	mitochondrion	77.19	79.45
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	75.76	75.76
KRH52991	Soybean	mitochondrion	52.34	51.81
VIT_18s0001g07000.t01	Wine grape	mitochondrion	52.75	51.59
PGSC0003DMT400004477	Potato	plastid	46.03	46.99
KRH62276	Soybean	mitochondrion	50.71	43.3
Solyc01g081320.2.1	Tomato	plastid	45.62	43.24
TraesCS6B01G391300.1	Wheat	mitochondrion	44.81	42.64
TraesCS6D01G341400.1	Wheat	mitochondrion	44.6	42.12
TraesCS6A01G358600.1	Wheat	mitochondrion	44.2	41.97
HORVU6Hr1G085430.2	Barley	mitochondrion	44.4	41.21
GSMUA_Achr7P12830_001	Banana	mitochondrion	45.42	40.99
Os02t0796400-00	Rice	mitochondrion	42.77	40.62
EES07683	Sorghum	mitochondrion	42.97	40.04
Zm00001d052030_P001	Maize	plastid	41.55	38.86
Zm00001d011182_P001	Maize	endoplasmic reticulum	30.35	30.28
Bra027131.1-P	Field mustard	mitochondrion	27.09	27.09
Bra038762.1-P	Field mustard	mitochondrion	26.88	27.05
Bra018528.1-P	Field mustard	mitochondrion	28.31	27.04
Bra033215.1-P	Field mustard	mitochondrion	28.11	26.95
Bra033321.1-P	Field mustard	mitochondrion	28.11	26.8
Bra036673.1-P	Field mustard	mitochondrion	26.07	26.78
Bra031484.1-P	Field mustard	mitochondrion	26.27	26.22
Bra000902.1-P	Field mustard	mitochondrion	26.68	26.15
Bra011054.1-P	Field mustard	mitochondrion	17.92	25.81
Bra028632.1-P	Field mustard	mitochondrion	19.96	24.26
Bra036496.1-P	Field mustard	plastid	19.96	20.21
Bra031586.1-P	Field mustard	mitochondrion	21.79	20.15
Bra032862.1-P	Field mustard	mitochondrion	14.87	19.26
Bra032863.1-P	Field mustard	mitochondrion	14.66	18.0
Bra027226.1-P	Field mustard	plastid	21.79	17.77
Bra003559.1-P	Field mustard	cytosol	23.22	16.01
Bra032865.1-P	Field mustard	cytosol	18.13	15.51
Bra001400.1-P	Field mustard	mitochondrion, plastid	22.0	14.42
Bra026128.1-P	Field mustard	cytosol	23.22	12.24
Bra032866.1-P	Field mustard	mitochondrion	13.85	10.66

Protein Annotations

EnsemblPlants:Bra020588.1	EnsemblPlants:Bra020588.1-P	EnsemblPlantsGene:Bra020588	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF578	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg
SUPFAM:SSF48452	UniParc:UPI0002546AA2	UniProt:M4DVP4	MapMan:35.1	:	:

Description

AT5G27460 (E=2e-198) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA02:-:24417979..24419638

Molecular Weight (calculated)

56613.0 Da

IEP (calculated)

9.275

GRAVY (calculated)

-0.236

Length

491 amino acids

Sequence
(BLAST)

001: MFTRFRLVTN KTFSTTTVLR LVSSRASTDT SSLSHHNSLK EILRKNGPRF SVPSLLQQRL DSGHPVTLPE LRSITNRLIK SNRHDIALQM MEWMETQKDV
101: HFSAYDTCLR LELIIKSHGL KQAEEYFEKL SLKASKASYL PLLRGYVRDK LVLEAESLME KLNGLGFLVT PHPFNEMMKL YEATHQYEKV VLVVSLMKRN
201: KIPRNVLSYN LWMNACCEVS GVECVYKEMV DDKSVEVGWS SLCALANVYV KAGFVEKASL VLESAEKKLN RSNRLGYFFL ITLYASLGNK EGVVKLWERS
301: KSVSGRATCA NYICVLTSLV KLGDLAEAES VFSEWEGTCF NYDVRVSNVL LGAYMRGGDI RRAEGLHHRV LERGGVPNYK TWEILMEGFV KCQSMEKAID
401: AMHRAFELMK DCHWRPSQKI VMAIAEYFEK EAKMDEANRY VRDLHRLGLA SLPLYRLLLR MHEHVQRPAS DIYEMMKLDN IIRENWKYRT L

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.