Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- cytosol 2
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19721 | Canola | mitochondrion | 74.95 | 77.15 |
| Bra020588.1-P | Field mustard | mitochondrion | 75.76 | 75.76 |
| Bra036629.1-P | Field mustard | mitochondrion | 73.52 | 75.68 |
| CDX99984 | Canola | mitochondrion | 73.52 | 75.52 |
| CDY25035 | Canola | mitochondrion, plastid | 75.15 | 75.31 |
| CDY05574 | Canola | mitochondrion | 76.17 | 71.37 |
| VIT_18s0001g07000.t01 | Wine grape | mitochondrion | 53.97 | 52.79 |
| KRH52991 | Soybean | mitochondrion | 51.53 | 51.01 |
| PGSC0003DMT400004477 | Potato | plastid | 46.03 | 46.99 |
| Solyc01g081320.2.1 | Tomato | plastid | 46.23 | 43.82 |
| KRH62276 | Soybean | mitochondrion | 50.31 | 42.96 |
| GSMUA_Achr7P12830_001 | Banana | mitochondrion | 47.45 | 42.83 |
| TraesCS6B01G391300.1 | Wheat | mitochondrion | 44.6 | 42.44 |
| TraesCS6D01G341400.1 | Wheat | mitochondrion | 44.2 | 41.73 |
| TraesCS6A01G358600.1 | Wheat | mitochondrion | 43.79 | 41.59 |
| Os02t0796400-00 | Rice | mitochondrion | 43.58 | 41.39 |
| HORVU6Hr1G085430.2 | Barley | mitochondrion | 44.2 | 41.02 |
| EES07683 | Sorghum | mitochondrion | 43.38 | 40.42 |
| Zm00001d052030_P001 | Maize | plastid | 42.36 | 39.62 |
| Zm00001d011182_P001 | Maize | endoplasmic reticulum | 31.57 | 31.5 |
| AT1G02150.1 | Thale cress | mitochondrion | 30.35 | 28.44 |
| AT5G09450.1 | Thale cress | mitochondrion | 23.42 | 28.12 |
| AT1G60770.1 | Thale cress | cytosol | 27.49 | 27.49 |
| AT4G21705.1 | Thale cress | mitochondrion | 27.49 | 27.44 |
| AT2G20710.1 | Thale cress | mitochondrion | 27.29 | 27.35 |
| AT4G02820.1 | Thale cress | mitochondrion | 29.33 | 27.07 |
| AT1G43010.1 | Thale cress | mitochondrion | 13.03 | 24.9 |
| AT4G01990.1 | Thale cress | mitochondrion | 25.25 | 24.7 |
| AT1G02370.1 | Thale cress | mitochondrion | 25.25 | 23.09 |
| AT1G28020.1 | Thale cress | cytosol, plastid | 22.81 | 22.67 |
| AT2G20720.1 | Thale cress | cytosol | 12.63 | 20.74 |
| AT1G80270.2 | Thale cress | mitochondrion | 23.83 | 19.63 |
| AT1G07590.1 | Thale cress | mitochondrion | 20.37 | 18.73 |
| AT3G11380.1 | Thale cress | mitochondrion | 20.57 | 18.67 |
| AT1G15480.1 | Thale cress | mitochondrion | 22.2 | 18.35 |
| AT1G28000.1 | Thale cress | mitochondrion | 14.46 | 18.3 |
| AT3G15590.2 | Thale cress | cytosol, mitochondrion | 22.0 | 17.7 |
| AT3G11350.1 | Thale cress | mitochondrion | 12.63 | 17.27 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:832805 | EMBL:AC007123 | ProteinID:AED93691.1 | ArrayExpress:AT5G27460 |
| EnsemblPlantsGene:AT5G27460 | RefSeq:AT5G27460 | TAIR:AT5G27460 | RefSeq:AT5G27460-TAIR-G | EnsemblPlants:AT5G27460.1 | TAIR:AT5G27460.1 |
| Unigene:At.30805 | EMBL:BX829458 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_198098.1 |
| PFAM:PF01535 | PFAM:PF13812 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF578 | InterPro:Pentatricopeptide_repeat | UniProt:Q3E911 | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00001625FD | SEG:seg | : | : | : |
Description
Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
Coordinates
chr5:-:9693175..9694844
Molecular Weight (calculated)
56204.7 Da
IEP (calculated)
8.666
GRAVY (calculated)
-0.137
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.