Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G11380.1 | Thale cress | mitochondrion | 50.81 | 46.4 |
| Bra032865.1-P | Field mustard | cytosol | 50.81 | 43.73 |
| AT1G43010.1 | Thale cress | mitochondrion | 21.86 | 42.02 |
| AT1G28000.1 | Thale cress | mitochondrion | 27.53 | 35.05 |
| Bra032866.1-P | Field mustard | mitochondrion | 43.52 | 33.7 |
| AT2G20710.1 | Thale cress | mitochondrion | 33.0 | 33.27 |
| AT3G11350.1 | Thale cress | mitochondrion | 23.28 | 32.03 |
| VIT_12s0028g03870.t01 | Wine grape | cytosol, mitochondrion | 29.15 | 28.86 |
| Solyc07g054090.2.1 | Tomato | cytosol, mitochondrion, plastid | 28.14 | 28.19 |
| Solyc07g054100.1.1 | Tomato | cytosol | 18.22 | 27.86 |
| PGSC0003DMT400047255 | Potato | cytosol, mitochondrion, plastid | 27.94 | 27.71 |
| PGSC0003DMT400047256 | Potato | extracellular | 18.02 | 27.55 |
| Os10t0501300-01 | Rice | mitochondrion | 26.72 | 25.73 |
| OQU91552 | Sorghum | mitochondrion | 25.71 | 24.9 |
| TraesCS1D01G166700.1 | Wheat | mitochondrion | 24.9 | 24.85 |
| TraesCS1B01G188200.1 | Wheat | mitochondrion | 24.7 | 24.8 |
| KRH22399 | Soybean | cytosol | 23.89 | 24.79 |
| AT1G02150.1 | Thale cress | mitochondrion | 26.11 | 24.62 |
| KRH26940 | Soybean | cytosol | 24.7 | 24.6 |
| AT4G21705.1 | Thale cress | mitochondrion | 24.49 | 24.59 |
| AT5G09450.1 | Thale cress | mitochondrion | 20.04 | 24.21 |
| Zm00001d032543_P001 | Maize | mitochondrion | 25.3 | 24.18 |
| Os10t0501000-01 | Rice | cytosol | 21.86 | 23.95 |
| GSMUA_Achr5P20750_001 | Banana | mitochondrion | 26.32 | 23.81 |
| AT4G01990.1 | Thale cress | mitochondrion | 23.48 | 23.11 |
| AT5G27460.1 | Thale cress | cytosol, mitochondrion, plastid | 22.67 | 22.81 |
| AT1G60770.1 | Thale cress | cytosol | 21.86 | 22.0 |
| AT4G02820.1 | Thale cress | mitochondrion | 23.28 | 21.62 |
| TraesCS1A01G168700.1 | Wheat | mitochondrion | 25.51 | 21.58 |
| Os10t0501200-00 | Rice | mitochondrion | 26.11 | 20.61 |
| AT1G02370.1 | Thale cress | mitochondrion | 20.85 | 19.18 |
| AT2G20720.1 | Thale cress | cytosol | 11.34 | 18.73 |
| AT1G07590.1 | Thale cress | mitochondrion | 18.42 | 17.04 |
| AT1G80270.2 | Thale cress | mitochondrion | 19.64 | 16.28 |
| AT1G15480.1 | Thale cress | mitochondrion | 19.23 | 15.99 |
| AT3G15590.2 | Thale cress | cytosol, mitochondrion | 18.02 | 14.59 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | ArrayExpress:AT1G28020 | EnsemblPlantsGene:AT1G28020 | RefSeq:AT1G28020 | TAIR:AT1G28020 |
| RefSeq:AT1G28020-TAIR-G | EnsemblPlants:AT1G28020.1 | TAIR:AT1G28020.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 |
| PFAM:PF01535 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF644 | InterPro:Pentatricopeptide_repeat | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000848C32C | : | : | : | : |
Description
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G28020]
Coordinates
chr1:-:9768889..9771157
Molecular Weight (calculated)
57115.1 Da
IEP (calculated)
9.051
GRAVY (calculated)
-0.478
Length
494 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC
101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK
201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP
401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGKAM ASRR
101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK
201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP
401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGKAM ASRR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.