Factsheet for AT4G21705.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX98698	Canola	mitochondrion	83.54	84.22
Bra038762.1-P	Field mustard	mitochondrion	82.72	83.4
VIT_10s0597g00040.t01	Wine grape	extracellular	59.96	58.3
CDX94049	Canola	cytosol	82.32	57.69
KRH10858	Soybean	mitochondrion	55.49	56.17
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	48.98	49.08
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	48.37	48.47
GSMUA_Achr1P02980_001	Banana	mitochondrion	48.58	45.09
Os07t0598500-01	Rice	mitochondrion	44.51	43.28
TraesCS1B01G188100.1	Wheat	mitochondrion	44.51	42.86
TraesCS1D01G166800.1	Wheat	mitochondrion	44.51	42.86
EER91421	Sorghum	mitochondrion	42.89	42.54
TraesCS1A01G168800.1	Wheat	mitochondrion	43.9	42.27
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	44.11	41.81
Zm00001d013923_P001	Maize	mitochondrion	41.67	41.0
EER90330	Sorghum	mitochondrion	41.06	40.24
EER90329	Sorghum	mitochondrion	40.65	39.76
AT4G01990.1	Thale cress	mitochondrion	30.08	29.48
AT2G20710.1	Thale cress	mitochondrion	29.27	29.39
AT1G60770.1	Thale cress	cytosol	29.27	29.33
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	27.44	27.49
AT1G02150.1	Thale cress	mitochondrion	28.66	26.91
AT1G02370.1	Thale cress	mitochondrion	29.27	26.82
AT4G02820.1	Thale cress	mitochondrion	28.46	26.32
AT5G09450.1	Thale cress	mitochondrion	20.53	24.69
AT1G43010.1	Thale cress	mitochondrion	12.8	24.51
AT1G28020.1	Thale cress	cytosol, plastid	24.59	24.49
AT3G11380.1	Thale cress	mitochondrion	25.2	22.92
AT3G11350.1	Thale cress	mitochondrion	15.04	20.61
AT1G28000.1	Thale cress	mitochondrion	16.06	20.36
AT2G20720.1	Thale cress	cytosol	11.79	19.4
AT1G80270.2	Thale cress	mitochondrion	23.37	19.3
AT1G07590.1	Thale cress	mitochondrion	19.92	18.35
AT1G15480.1	Thale cress	mitochondrion	22.15	18.35
AT3G15590.2	Thale cress	cytosol, mitochondrion	22.36	18.03

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:828258	ProteinID:AEE84492.1	EMBL:AL035527	ArrayExpress:AT4G21705
EnsemblPlantsGene:AT4G21705	RefSeq:AT4G21705	TAIR:AT4G21705	RefSeq:AT4G21705-TAIR-G	EnsemblPlants:AT4G21705.1	TAIR:AT4G21705.1
Unigene:At.45334	EMBL:BT003959	EMBL:BT005061	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	RefSeq:NP_680735.1	PFAM:PF01535	PFAM:PF13041	PO:PO:0000293
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1638	InterPro:Pentatricopeptide_repeat	UniProt:Q84JR3	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000000C205	:	:	:

Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]

Coordinates

chr4:-:11532971..11534867

Molecular Weight (calculated)

56580.2 Da

IEP (calculated)

7.852

GRAVY (calculated)

-0.405

Length

492 amino acids

Sequence
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.