Factsheet for PGSC0003DMT400076417

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g078350.2.1	Tomato	cytosol, mitochondrion	96.54	96.54
VIT_10s0597g00040.t01	Wine grape	extracellular	59.88	58.1
KRH10858	Soybean	mitochondrion	56.42	57.0
Bra038762.1-P	Field mustard	mitochondrion	48.88	49.18
CDX98698	Canola	mitochondrion	48.68	48.98
AT4G21705.1	Thale cress	mitochondrion	48.47	48.37
GSMUA_Achr1P02980_001	Banana	mitochondrion	48.68	45.09
PGSC0003DMT400032340	Potato	mitochondrion	42.97	43.59
EER91421	Sorghum	mitochondrion	42.16	41.73
Zm00001d013923_P001	Maize	mitochondrion	41.75	41.0
Os07t0598500-01	Rice	mitochondrion	41.96	40.71
TraesCS1D01G166800.1	Wheat	mitochondrion	41.34	39.73
EER90330	Sorghum	mitochondrion	40.33	39.44
TraesCS1A01G168800.1	Wheat	mitochondrion	40.94	39.33
TraesCS1B01G188100.1	Wheat	mitochondrion	40.73	39.14
HORVU1Hr1G045170.4	Barley	cytosol, mitochondrion, nucleus, plastid	41.34	39.11
EER90329	Sorghum	mitochondrion	38.9	37.97
CDX94049	Canola	cytosol	47.86	33.48
PGSC0003DMT400031020	Potato	cytosol	7.94	32.77
PGSC0003DMT400047256	Potato	extracellular	20.98	31.89
PGSC0003DMT400023279	Potato	mitochondrion	31.36	31.11
PGSC0003DMT400002590	Potato	cytosol	29.94	29.88
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	30.14	29.72
PGSC0003DMT400004477	Potato	plastid	28.11	28.69
PGSC0003DMT400058755	Potato	cytosol	22.81	28.35
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	27.09	27.82
PGSC0003DMT400031016	Potato	cytosol	16.7	26.97
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	28.72	26.91
PGSC0003DMT400077284	Potato	mitochondrion	28.51	26.72
PGSC0003DMT400080049	Potato	cytosol, plastid	28.92	26.05
PGSC0003DMT400011461	Potato	mitochondrion	20.98	25.75
PGSC0003DMT400007271	Potato	mitochondrion	25.05	25.47
PGSC0003DMT400092266	Potato	mitochondrion	9.37	24.86
PGSC0003DMT400069375	Potato	cytosol	19.96	20.68
PGSC0003DMT400022632	Potato	mitochondrion	24.03	18.91
PGSC0003DMT400021596	Potato	mitochondrion	23.42	18.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400076417	EnsemblPlantsGene:PGSC0003DMG400029717	EntrezGene:102595648	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF1638	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	PGSC:PGSC0003DMG400029717	RefSeq:XP_006347052.1
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI000295A8B3	UniProt:M1CWQ3	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029717]

Coordinates

chr2:+:34054210..34057574

Molecular Weight (calculated)

56682.1 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.472

Length

491 amino acids

Sequence
(BLAST)

001: MQVNRRIFQA LTGITNRFYH SDKPKKVSLY SKISPLGNPT CTVTNELDEW VCKGNKIRFA EMQRIILDLR KRKRFSQALE ASEWLKSSGI FTFSSTEHAV
101: QLDLIGKVHG FPDAESYFNN LSKEDKNDKT YGALLHCYVR QCQMEKALTH LRKMEEEGVS LSSVAFNDIM SLYTRTGEYE RIPEMLRHMK EIGVCPDNLS
201: YRICINSYGA RSDIEGMERV LNEMENQSFI VMDWNTYAAV ANTYVKEGLN DKANSFLKKA EEKIDNKEGI GYNYLISVHS KLGNKDEVIR LWFLEKSALK
301: RCINRDYINM LEALVRLDSL EEAEQLLKEW ETSDNCYDIR VPYIVIIGYT DKQLYEKAET MLEDLSTKGK ILTPNVWGRL AAGYLDKDKF ERGVKCMKVA
401: LSLKKDRKGW KPDPKVIMRI LSLFAENGNV NDAESFFHSL RPIVAVNREM YHALLKSYIA DGKEVESLLN SMRDDNIDEN EETKVILGIN Q

Best Arabidopsis Sequence Match ( AT4G21705.1 )
(BLAST)

001: MNILRRIPAN LIASRYYYTN RVKKTTLYSK ISPLGDPKSS VYPELQNWVQ CGKKVSVAEL IRIVHDLRRR KRFLHALEVS KWMNETGVCV FSPTEHAVHL
101: DLIGRVYGFV TAEEYFENLK EQYKNDKTYG ALLNCYVRQQ NVEKSLLHFE KMKEMGFVTS SLTYNNIMCL YTNIGQHEKV PKVLEEMKEE NVAPDNYSYR
201: ICINAFGAMY DLERIGGTLR DMERRQDITM DWNTYAVAAK FYIDGGDCDR AVELLKMSEN RLEKKDGEGY NHLITLYARL GKKIEVLRLW DLEKDVCKRR
301: INQDYLTVLQ SLVKIDALVE AEEVLTEWKS SGNCYDFRVP NTVIRGYIGK SMEEKAEAML EDLARRGKAT TPESWELVAT AYAEKGTLEN AFKCMKTALG
401: VEVGSRKWRP GLTLVTSVLS WVGDEGSLKE VESFVASLRN CIGVNKQMYH ALVKADIREG GRNIDTLLQR MKDDKIEIDE ETTVILSTRS PC

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q84JR3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.