Factsheet for PGSC0003DMT400047256

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2
plastid 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g054100.1.1	Tomato	cytosol	89.78	89.78
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	88.54	57.43
CDY35213	Canola	cytosol	4.64	36.59
PGSC0003DMT400031020	Potato	cytosol	12.69	34.45
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	45.2	29.26
KRH22399	Soybean	cytosol	39.94	27.1
KRH26940	Soybean	cytosol	40.87	26.61
PGSC0003DMT400058755	Potato	cytosol	32.2	26.33
AT2G20710.1	Thale cress	mitochondrion	38.39	25.31
CDY39781	Canola	mitochondrion	37.15	25.1
CDY03299	Canola	mitochondrion	36.53	24.95
Bra036673.1-P	Field mustard	mitochondrion	36.84	24.9
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	33.13	22.38
PGSC0003DMT400032340	Potato	mitochondrion	31.89	21.28
TraesCS1B01G188200.1	Wheat	mitochondrion	32.2	21.14
PGSC0003DMT400031016	Potato	cytosol	19.81	21.05
TraesCS1D01G166700.1	Wheat	mitochondrion	32.2	21.01
PGSC0003DMT400076417	Potato	cytosol, mitochondrion	31.89	20.98
Os10t0501300-01	Rice	mitochondrion	32.82	20.66
Bra011054.1-P	Field mustard	mitochondrion	21.67	20.53
AT2G20720.1	Thale cress	cytosol	18.89	20.4
PGSC0003DMT400002590	Potato	cytosol	30.34	19.92
PGSC0003DMT400004477	Potato	plastid	29.1	19.54
GSMUA_Achr5P20750_001	Banana	mitochondrion	32.82	19.41
OQU91552	Sorghum	mitochondrion	30.34	19.22
PGSC0003DMT400012266	Potato	cytosol, mitochondrion, plastid	30.96	19.08
PGSC0003DMT400080049	Potato	cytosol, plastid	32.2	19.08
CDY65573	Canola	mitochondrion	21.67	18.92
PGSC0003DMT400077284	Potato	mitochondrion	30.34	18.7
AT1G28020.1	Thale cress	cytosol, plastid	27.55	18.02
PGSC0003DMT400023279	Potato	mitochondrion	27.55	17.98
Os10t0501000-01	Rice	cytosol	25.08	17.96
TraesCS1A01G168700.1	Wheat	mitochondrion	32.2	17.81
Zm00001d032543_P001	Maize	mitochondrion	28.17	17.6
PGSC0003DMT400007271	Potato	mitochondrion	25.39	16.98
Os10t0501200-00	Rice	mitochondrion	32.82	16.93
CDY05786	Canola	plastid	23.84	15.88
Bra036496.1-P	Field mustard	plastid	23.84	15.88
CDY31943	Canola	plastid	23.84	15.88
CDY71968	Canola	plastid	13.93	15.41
PGSC0003DMT400011461	Potato	mitochondrion	17.96	14.5
PGSC0003DMT400069375	Potato	cytosol	21.05	14.35
AT3G11380.1	Thale cress	mitochondrion	23.84	14.23
CDY35212	Canola	mitochondrion	11.76	13.52
AT1G28000.1	Thale cress	mitochondrion	15.48	12.89
Bra032862.1-P	Field mustard	mitochondrion	14.24	12.14
Bra001400.1-P	Field mustard	mitochondrion, plastid	27.55	11.88
Bra032863.1-P	Field mustard	mitochondrion	14.55	11.75
CDY48421	Canola	mitochondrion	14.86	11.62
CDY53325	Canola	mitochondrion	25.08	11.6
CDY27647	Canola	mitochondrion	14.55	11.55
Bra032865.1-P	Field mustard	cytosol	20.43	11.5
CDY53324	Canola	mitochondrion, plastid	25.39	11.22
PGSC0003DMT400022632	Potato	mitochondrion	21.36	11.06
PGSC0003DMT400021596	Potato	mitochondrion	20.43	10.77
AT1G43010.1	Thale cress	mitochondrion	8.36	10.51
CDY27645	Canola	mitochondrion	8.05	10.04
AT3G11350.1	Thale cress	mitochondrion	11.15	10.03
CDX73880	Canola	mitochondrion	14.24	9.18
CDY66759	Canola	cytosol	21.05	9.1
Bra032866.1-P	Field mustard	mitochondrion	16.72	8.46
PGSC0003DMT400092266	Potato	mitochondrion	1.24	2.16
CDY00734	Canola	mitochondrion	0.93	1.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400047256	EnsemblPlantsGene:PGSC0003DMG401018347	EntrezGene:102597017	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PGSC:PGSC0003DMG401018347
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0002953F37	UniProt:M1BKE1	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG401018347]

Coordinates

chr7:+:49058894..49064395

Molecular Weight (calculated)

36887.9 Da

IEP (calculated)

7.779

GRAVY (calculated)

-0.348

Length

323 amino acids

Sequence
(BLAST)

001: MHKLKQLGYA STLAYNVMMT LYAKLGYLEK LQSLVLEMED NGISGDLISY NILLNVYASV PNVAEMEKVL MKMEVDPLLI DWSSYAIAAK GYLKAGDIEK
101: ANESLKKCEH RLMGKREKLG IDMLITLYTS VGNKDDVYRI WNKYKKKVKR HNSSYHCMIR GLEKLDDLDG AKEIFAEWET NRVQFDIRIP NLLIIAYCKK
201: GHMEKAISII EQLEESGKHP NGSTWNRLAL GYCVQIDTDK AVDTMKKAIL ASQPGWKPRF HSLASCVKYL QSKGDTQGEE ELKDLLRVRG LCSKEFERGL
301: DKYIEIGNLK SEALNEINIE EIC

Best Arabidopsis Sequence Match ( AT2G20710.2 )
(BLAST)

001: MSEHRVHEIS EGDVAIRLDL IAKVGGLGEA EKFFETIPME RRNYHLYGAL LNCYASKKVL HKAEQVFQEM KELGFLKGCL PYNVMLNLYV RTGKYTMVEK
101: LLREMEDETV KPDIFTVNTR LHAYSVVSDV EGMEKFLMRC EADQGLHLDW RTYADTANGY IKAGLTEKAL EMLRKSEQMV NAQKRKHAYE VLMSFYGAAG
201: KKEEVYRLWS LYKELDGFYN TGYISVISAL LKMDDIEEVE KIMEEWEAGH SLFDIRIPHL LITGYCKKGM MEKAEEVVNI LVQKWRVEDT STWERLALGY
301: KMAGKMEKAV EKWKRAIEVS KPGWRPHQVV LMSCVDYLEG QRDMEGLRKI LRLLSERGHI SYDQLLYDMN GAGLSWKIVD AMGKGRYVEE REVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.