CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27647	Canola	mitochondrion	88.14	89.43
CDY27645	Canola	mitochondrion	51.57	82.24
AT1G28000.1	Thale cress	mitochondrion	58.35	62.11
CDY35212	Canola	mitochondrion	27.84	40.93
CDY65573	Canola	mitochondrion	31.23	34.86
CDY00734	Canola	mitochondrion	14.53	33.9
CDY71968	Canola	plastid	23.49	33.22
CDY50357	Canola	mitochondrion	12.11	25.0
CDY24553	Canola	mitochondrion	17.43	25.0
CDY03299	Canola	mitochondrion	27.36	23.89
CDY39781	Canola	mitochondrion	27.6	23.85
CDX73880	Canola	mitochondrion	24.46	20.16
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	23.73	19.88
CDY05786	Canola	plastid	23.24	19.79
CDY31943	Canola	plastid	23.24	19.79
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	23.49	19.48
CDY44801	Canola	mitochondrion	18.64	19.06
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	22.52	18.64
CDY53325	Canola	mitochondrion	30.75	18.19
CDY53324	Canola	mitochondrion, plastid	31.48	17.78
CDX90079	Canola	mitochondrion	22.03	17.77
KRH22399	Soybean	cytosol	20.34	17.65
CDY15126	Canola	cytosol, mitochondrion, plastid	21.79	17.58
KRH26940	Soybean	cytosol	20.82	17.34
GSMUA_Achr5P20750_001	Banana	mitochondrion	22.76	17.22
CDY35213	Canola	cytosol	1.69	17.07
Os10t0501300-01	Rice	mitochondrion	21.07	16.96
TraesCS1B01G188200.1	Wheat	mitochondrion	19.85	16.67
CDX98698	Canola	mitochondrion	19.37	16.39
TraesCS1D01G166700.1	Wheat	mitochondrion	19.61	16.36
CDX97288	Canola	mitochondrion	20.34	16.34
OQU91552	Sorghum	mitochondrion	19.85	16.08
Zm00001d032543_P001	Maize	mitochondrion	20.1	16.05
CDX91277	Canola	mitochondrion	20.1	15.99
Os10t0501000-01	Rice	cytosol	17.43	15.96
CDX96239	Canola	mitochondrion	18.89	15.89
Solyc07g054100.1.1	Tomato	cytosol	12.11	15.48
CDY46999	Canola	mitochondrion	18.4	15.48
CDY34141	Canola	mitochondrion	18.4	15.45
CDY19721	Canola	mitochondrion	17.68	15.3
PGSC0003DMT400047256	Potato	extracellular	11.62	14.86
CDX99984	Canola	mitochondrion	17.19	14.85
TraesCS1A01G168700.1	Wheat	mitochondrion	20.58	14.55
CDY25035	Canola	mitochondrion, plastid	16.95	14.29
CDY15237	Canola	mitochondrion	17.68	14.23
CDX89976	Canola	mitochondrion	17.68	14.17
Os10t0501200-00	Rice	mitochondrion	21.31	14.06
CDX91822	Canola	mitochondrion	16.95	14.0
CDX90962	Canola	mitochondrion	16.46	13.57
CDY66759	Canola	cytosol	24.46	13.52
CDY05574	Canola	mitochondrion	16.95	13.36
CDY39654	Canola	mitochondrion	17.19	11.81
CDY36566	Canola	mitochondrion	16.95	11.65
CDX94049	Canola	cytosol	19.37	11.4
CDY57695	Canola	mitochondrion	15.98	10.95
CDY09903	Canola	mitochondrion	14.04	10.94
CDY06272	Canola	mitochondrion	13.8	10.75
CDX97686	Canola	plastid	15.01	10.0
CDY30088	Canola	plastid	14.29	9.56
CDX79395	Canola	cytosol	15.98	6.44
CDY50358	Canola	cytosol	2.66	4.68
CDY24554	Canola	cytosol	0.97	2.61
CDY36565	Canola	cytosol	0.97	1.19

Protein Annotations

EnsemblPlants:CDY48421	EnsemblPlantsGene:GSBRNA2T00089444001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	ProteinID:CDY48421	ProteinID:CDY48421.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EEC516	UniProt:A0A078IEF8	MapMan:35.1	:	:	:

Description

BnaCnng16340DBnaCnng16340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEF8]

Coordinates

chrLK032772:-:57123..58565

Molecular Weight (calculated)

45516.7 Da

IEP (calculated)

7.721

GRAVY (calculated)

-0.620

Length

413 amino acids

Sequence
(BLAST)

001: MMQSLGRYSK RFLLFRKTQP MIQFTRTLTS AKLNDTLHSR VMAVENRFPF LWRVKVTPVL NEWLKQGNEI NPTDLRAVIK ALCESQRFDH ALQVSEWITK
101: RGVFELSTED VASRLYLIEI HSGLSEAENF FKSVPENMKD DLVYTTLLSF YAKDKETRHE AEATYQKMRE NNMLFKPNPY YKMISLYGLL GETNMVDEIV
201: RQMRENGVQH DITLTSNNVL KTYASVPDVE AMEKFLKRIE DETPPLALAW QTGISMAKAY LKSGSSGKAI KMLRRTEQVV DAKSKDAANK ELMEMYGEAG
301: AKRDESRLYI SQNANQGRRK GAYRCKGSGG RSSNHPGYYY GGCGGGCGSI RGGGDGSRAD DNGGGDDSRA DDDGGGVGAD NDGGGVGADN YGDSGSRCGG
401: GCGGGCGGCG SWD

Best Arabidopsis Sequence Match ( AT1G28000.1 )
(BLAST)

001: MKCLGRYAIK NLLSRRLPSI RFAGTLTSPK LNETSHSRIM ALGREQKKVT PPLDEWLKRG KDLNPAVLRG LINSLCESQR FNHALQVSEW ITKRGIFDLS
101: TEDFASRLCL VEISTGLKEA EKFFKSIPEN MRDDSVHTTL LSLYTISKKT RHEAEATYQT MRVQNMLLKP YPYYSMIYLY ALLGEKNMID EILRQMKENG
201: VEHDKNLTAN NVLKAYASLP DVEAMEMFLM GLEVEEPRFS LAWQTGISIA KAYLKGGSSR KAVEMLRRTE LVVDTKSKDS ANKVLMMMYW DAGAKQDASR
301: LSRLIYPKSK KGKRMKAYDE KIESYGGDSS DPIIFIDNRR DCGSVGDGDG DVDVDVDVDV DDGFSGSSDG GASCGGGGCG GGGCGGGD

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.