CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46999	Canola	mitochondrion	98.98	98.98
CDY50358	Canola	cytosol	46.84	97.87
CDY50357	Canola	mitochondrion	39.71	97.5
CDY24553	Canola	mitochondrion	56.42	96.18
CDY34141	Canola	mitochondrion	91.45	91.26
AT1G60770.1	Thale cress	cytosol	86.97	86.97
CDY24554	Canola	cytosol	25.46	81.7
VIT_00s0394g00020.t01	Wine grape	cytosol	67.41	67.69
KRH45616	Soybean	nucleus	63.75	63.88
PGSC0003DMT400002590	Potato	cytosol	63.75	63.62
Solyc11g006380.1.1	Tomato	cytosol	63.34	63.21
GSMUA_Achr1P16170_001	Banana	cytosol	61.3	61.81
KRG99413	Soybean	cytosol, mitochondrion	41.55	58.12
Os04t0320200-01	Rice	mitochondrion	60.49	56.68
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.49	55.31
EER87766	Sorghum	cytosol	60.29	55.22
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	60.29	55.12
TraesCS4A01G428500.1	Wheat	mitochondrion	60.49	55.1
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	60.29	53.72
Zm00001d045492_P004	Maize	cytosol	60.49	49.83
CDX91822	Canola	mitochondrion	36.05	35.4
CDX90962	Canola	mitochondrion	35.44	34.73
CDY15237	Canola	mitochondrion	36.05	34.5
CDX89976	Canola	mitochondrion	36.05	34.37
CDX98698	Canola	mitochondrion	29.94	30.12
CDX99984	Canola	mitochondrion	28.11	28.87
CDY19721	Canola	mitochondrion	27.9	28.72
CDX91277	Canola	mitochondrion	29.94	28.32
CDX97288	Canola	mitochondrion	29.33	28.02
CDY15126	Canola	cytosol, mitochondrion, plastid	28.51	27.34
CDY44801	Canola	mitochondrion	22.4	27.23
CDX90079	Canola	mitochondrion	28.31	27.15
CDY25035	Canola	mitochondrion, plastid	26.68	26.73
CDY05574	Canola	mitochondrion	27.29	25.57
CDY65573	Canola	mitochondrion	19.14	25.41
CDY03299	Canola	mitochondrion	24.44	25.37
CDY39781	Canola	mitochondrion	24.64	25.31
CDY35213	Canola	cytosol	2.04	24.39
CDY35212	Canola	mitochondrion	13.44	23.49
CDY39654	Canola	mitochondrion	27.29	22.3
CDY36566	Canola	mitochondrion	27.29	22.3
CDY09903	Canola	mitochondrion	23.83	22.08
CDY06272	Canola	mitochondrion	23.83	22.08
CDY27645	Canola	mitochondrion	11.41	21.62
CDX94049	Canola	cytosol	29.53	20.66
CDY71968	Canola	plastid	12.22	20.55
CDY57695	Canola	mitochondrion	24.44	19.9
CDY00734	Canola	mitochondrion	6.92	19.21
CDY48421	Canola	mitochondrion	15.89	18.89
CDX97686	Canola	plastid	23.63	18.71
CDY27647	Canola	mitochondrion	15.48	18.67
CDY05786	Canola	plastid	18.13	18.35
CDY31943	Canola	plastid	18.13	18.35
CDY30088	Canola	plastid	23.01	18.31
CDY53325	Canola	mitochondrion	22.0	15.47
CDY53324	Canola	mitochondrion, plastid	22.0	14.77
CDX73880	Canola	mitochondrion	13.03	12.77
CDX79395	Canola	cytosol	24.24	11.61
CDY66759	Canola	cytosol	17.31	11.38
CDY36565	Canola	cytosol	1.43	2.09

Protein Annotations

EnsemblPlants:CDX96239	EnsemblPlantsGene:GSBRNA2T00102353001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF494	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX96239	ProteinID:CDX96239.1
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EE7CD7	MapMan:35.1	:	:

Description

BnaC02g14120D

Coordinates

chrLK031893:+:1112937..1114620

Molecular Weight (calculated)

55881.5 Da

IEP (calculated)

8.734

GRAVY (calculated)

-0.471

Length

491 amino acids

Sequence
(BLAST)

001: MALRHLSRPR DIVKRSTKKY LDEPLYHRLF KDGGSEVSVR QQLNQFLKGT KHVFKWEVGD TIKKLRSRGL YYPALKLSEV MEHRGMNKTV SDQAIHLDLI
101: AKARGIAAGE SYFVDLPETS KTELTYASLL NCYCKELMTE KAEGLLNKMK ELNITVSSMS YNSLMTLYTK TGQAERVPGM IQEMKAEDVM PDSYTYNVWM
201: RALAATEDVS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSEKAEK ALQELEMKNT ERDFKAYQFL ITLYGRLGKL NEVYRIWRSL RLAMPKTSNV
301: AYLNMIQVLV NLKDLPGAET LFKEWQANCS TYDIRVVNVM IGAYAREGLI EKANELKEKS PRRGGKLNAK TWELFMDYYV KRGETAQALE CITKAVSIGK
401: GDGGKWLPSE DTVRALMSQF EEKKDVNGAE SLLEILKKGT DDVGAETFES LIRTYAAAGK SHPAMRQRLK MEKVKVDKAT EKLLDELCQD E

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.