CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71968	Canola	plastid	39.53	98.97
CDX73880	Canola	mitochondrion	67.58	98.6
Bra001400.1-P	Field mustard	mitochondrion, plastid	97.81	95.46
CDY53325	Canola	mitochondrion	55.13	57.74
AT3G11350.1	Thale cress	mitochondrion	27.63	56.27
CDY00734	Canola	mitochondrion	13.13	54.24
CDY35212	Canola	mitochondrion	16.14	41.99
CDY65573	Canola	mitochondrion	21.2	41.89
CDY35213	Canola	cytosol	2.33	41.46
CDY27645	Canola	mitochondrion	13.82	39.0
CDY66759	Canola	cytosol	39.26	38.42
CDY48421	Canola	mitochondrion	17.78	31.48
CDY27647	Canola	mitochondrion	17.24	30.96
CDY39781	Canola	mitochondrion	19.7	30.13
CDY03299	Canola	mitochondrion	19.15	29.6
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	19.15	28.06
CDX98698	Canola	mitochondrion	17.65	26.43
Os10t0501300-01	Rice	mitochondrion	18.33	26.12
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	17.24	25.56
PGSC0003DMT400047256	Potato	extracellular	11.22	25.39
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	17.24	25.3
GSMUA_Achr5P20750_001	Banana	mitochondrion	18.88	25.27
Solyc07g054100.1.1	Tomato	cytosol	11.08	25.08
Zm00001d032543_P001	Maize	mitochondrion	17.51	24.76
OQU91552	Sorghum	mitochondrion	17.1	24.51
CDY50357	Canola	mitochondrion	6.7	24.5
CDY24553	Canola	mitochondrion	9.58	24.31
Os10t0501000-01	Rice	cytosol	14.91	24.17
KRH22399	Soybean	cytosol	15.73	24.16
KRH26940	Soybean	cytosol	16.28	23.99
CDY15126	Canola	cytosol, mitochondrion, plastid	16.69	23.83
CDY44801	Canola	mitochondrion	13.13	23.76
CDY05786	Canola	plastid	15.73	23.71
CDX97288	Canola	mitochondrion	16.55	23.54
CDY31943	Canola	plastid	15.6	23.51
CDX90079	Canola	mitochondrion	16.42	23.44
TraesCS1B01G188200.1	Wheat	mitochondrion	15.73	23.37
CDX91277	Canola	mitochondrion	16.28	22.93
TraesCS1D01G166700.1	Wheat	mitochondrion	15.46	22.83
CDY46999	Canola	mitochondrion	14.91	22.2
CDX96239	Canola	mitochondrion	14.77	22.0
CDY34141	Canola	mitochondrion	14.77	21.95
CDY50358	Canola	cytosol	6.98	21.7
CDY19721	Canola	mitochondrion	13.95	21.38
CDX90962	Canola	mitochondrion	14.64	21.36
CDX91822	Canola	mitochondrion	14.23	20.8
CDX99984	Canola	mitochondrion	13.41	20.5
Os10t0501200-00	Rice	mitochondrion	17.51	20.45
CDY25035	Canola	mitochondrion, plastid	13.68	20.41
TraesCS1A01G168700.1	Wheat	mitochondrion	15.87	19.86
CDX89976	Canola	mitochondrion	13.68	19.42
CDY15237	Canola	mitochondrion	13.54	19.3
CDY05574	Canola	mitochondrion	13.68	19.08
CDX94049	Canola	cytosol	18.19	18.95
CDY24554	Canola	cytosol	3.56	16.99
CDY09903	Canola	mitochondrion	12.18	16.79
CDX97686	Canola	plastid	14.23	16.77
CDY06272	Canola	mitochondrion	11.9	16.42
CDY30088	Canola	plastid	13.68	16.21
CDY39654	Canola	mitochondrion	12.72	15.47
CDY36566	Canola	mitochondrion	12.59	15.31
CDY57695	Canola	mitochondrion	12.31	14.93
CDX79395	Canola	cytosol	12.72	9.07
CDY36565	Canola	cytosol	0.41	0.9

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:A0A078IV84	UniProt:A0A078IV84	EnsemblPlants:CDY53324	ProteinID:CDY53324
ProteinID:CDY53324.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	EnsemblPlantsGene:GSBRNA2T00010444001	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	TMHMM:TMhelix
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE9488	SEG:seg	:	:	:

Description

BnaCnng24860DBnaCnng24860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IV84]

Coordinates

chrLK033187:-:58366..60615

Molecular Weight (calculated)

84473.0 Da

IEP (calculated)

7.276

GRAVY (calculated)

-0.381

Length

731 amino acids

Sequence
(BLAST)

001: MMSHNLQHHT RSILAHSSRT LLFCSYTNGT LPSSPRHSTT TLHSRIEAAS EGKTAITRVL EQWRRQQKGK QINPSMVRVL VEELRDSQRF RQALEVSDWM
101: IEHKLCNLIP EDFTARFCLM ENVLGLKEAE KFFESVPENQ RGEAIYTALL NCYTVKKDLV KAEGTFKNMR EIGLLLKPLP YNSMMSLYFS VRKRDKVDEI
201: MREMKENNVQ FDTLTVNIAL RVYASVSDLL AMEKLLAHWE GTITLHCLTS LDMAKAYLRN DHESYAELLT LYGEAGERED VYRIWDLYKM TEKQDNDGFR
301: ALFGSLLKLD DLNGAEEIYY NEWDGSGLDL DVRIPTMLAS GYREKGLVKK ADKLMIKTIR NEKMVRPIGQ LLVEWGKKGN LVEPSYMREL IKDLCDSKQY
401: PKALEASTWV SERNLFALFP EDYAARLHLI DNVLGLEQAE KFFNCSMPEN MKNYSVYSTL LTTYTRSSKT VDKAEATFEK MEELGFLLNS TPFNSMISLY
501: SEMRKRSKVM KLLEKMKEKN IEPDNVIMNH VLRVNAYVSA MECMEKYKRE WEDNNLKLEV RTMDAIAKAY EAEGSTLKAI EITSSKKEVY RLWDAYKKDS
601: VGDMSNEGYR SVIRSLLKLD DVKGAQEVFN EWKPERYEFD SRIPSLLISR YCEEEKYNEV KTRDVMKLSR KKRRGLQFEL FKDVCVILTA TSFGVGFVPC
701: MVWICGGETI TVWGSLGVVV TGIVLAVTNS F

Best Arabidopsis Sequence Match ( AT3G11380.1 )
(BLAST)

001: MSMRHNLQRH AKRILAYSNR PRFFCSYTNV TLSSPATNQT LQSRIEAASH QKAEITTVLE QWLQQQQQQG KQLNPSLLRG IVEKLRSSNR PRQALEVSDW
101: MVEQKMYNLP EDFSARFHLT EKVLNLEEAE KFFESIPENM RFESMYNSLL RSYARQSGEK ALKKAESVFK KMKKLGLLLR PSPYNSMTSL YSSLGNRDKV
201: DEILREMKEN NVELDNVTVN NALRVYAAVS DVATMDKFLA DRKEITRLDG LTMLAMAKAY ELMSLYGEAG EIEDVHRVWD KYKATRQKDN EEFRTLIGSL
301: LKLGDTKGAE KIYYNEWECS GLEFDNRIPD MLVSGYREKG MVMKADKLVN KTLWIRGLAT PITLLLEEMD KKGNKVSPPG LRDLIKNLRD SNQLSKALEA
401: STWMCQKKVF NLFSEDYATR LHLTEKVLGL EEAENFFESS IPENMKDYSV YDTLLSCYAR SSNTQSKAEA VFEKMRELGL QSKLSPFNSL ISLYSGQGKL
501: SVVNILLCDM KHKNIEPDIV TRNNVLRANA YILAIDSMEK V

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAY6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.