CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24553	Canola	mitochondrion	57.52	98.26
CDY50357	Canola	mitochondrion	38.62	95.0
CDY24554	Canola	cytosol	28.86	92.81
CDX96239	Canola	mitochondrion	91.26	91.45
CDY46999	Canola	mitochondrion	91.06	91.24
AT1G60770.1	Thale cress	cytosol	86.18	86.35
CDY50358	Canola	cytosol	40.04	83.83
VIT_00s0394g00020.t01	Wine grape	cytosol	66.46	66.87
KRH45616	Soybean	nucleus	64.84	65.1
PGSC0003DMT400002590	Potato	cytosol	64.02	64.02
Solyc11g006380.1.1	Tomato	cytosol	63.62	63.62
GSMUA_Achr1P16170_001	Banana	cytosol	60.57	61.19
KRG99413	Soybean	cytosol, mitochondrion	42.89	60.11
Os04t0320200-01	Rice	mitochondrion	59.55	55.92
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.35	54.38
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.15	54.19
TraesCS4A01G428500.1	Wheat	mitochondrion	59.35	54.17
EER87766	Sorghum	cytosol	58.74	53.92
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	59.15	52.81
Zm00001d045492_P004	Maize	cytosol	59.35	48.99
CDX91822	Canola	mitochondrion	36.38	35.8
CDX90962	Canola	mitochondrion	35.77	35.13
CDY15237	Canola	mitochondrion	35.77	34.31
CDX89976	Canola	mitochondrion	35.77	34.17
CDX98698	Canola	mitochondrion	29.07	29.3
CDX99984	Canola	mitochondrion	27.44	28.24
CDX91277	Canola	mitochondrion	29.47	27.94
CDY19721	Canola	mitochondrion	26.83	27.67
CDX97288	Canola	mitochondrion	28.86	27.63
CDY15126	Canola	cytosol, mitochondrion, plastid	28.46	27.34
CDX90079	Canola	mitochondrion	28.25	27.15
CDY44801	Canola	mitochondrion	21.95	26.73
CDY25035	Canola	mitochondrion, plastid	25.61	25.71
CDY65573	Canola	mitochondrion	18.9	25.14
CDY03299	Canola	mitochondrion	23.98	24.95
CDY39781	Canola	mitochondrion	24.19	24.9
CDY05574	Canola	mitochondrion	26.42	24.81
CDY35212	Canola	mitochondrion	13.21	23.13
CDY39654	Canola	mitochondrion	27.24	22.3
CDY36566	Canola	mitochondrion	27.24	22.3
CDY09903	Canola	mitochondrion	23.78	22.08
CDY35213	Canola	cytosol	1.83	21.95
CDY06272	Canola	mitochondrion	23.58	21.89
CDY27645	Canola	mitochondrion	11.18	21.24
CDX94049	Canola	cytosol	29.07	20.37
CDY71968	Canola	plastid	11.99	20.21
CDY57695	Canola	mitochondrion	24.39	19.9
CDY00734	Canola	mitochondrion	6.71	18.64
CDY48421	Canola	mitochondrion	15.45	18.4
CDX97686	Canola	plastid	23.17	18.39
CDY30088	Canola	plastid	22.56	17.99
CDY27647	Canola	mitochondrion	14.84	17.94
CDY31943	Canola	plastid	16.67	16.91
CDY05786	Canola	plastid	16.67	16.91
CDY53325	Canola	mitochondrion	22.56	15.9
CDY53324	Canola	mitochondrion, plastid	21.95	14.77
CDX73880	Canola	mitochondrion	13.21	12.97
CDY66759	Canola	cytosol	17.68	11.65
CDX79395	Canola	cytosol	24.19	11.61
CDY36565	Canola	cytosol	1.42	2.09

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078H8M3	EnsemblPlants:CDY34141	ProteinID:CDY34141	ProteinID:CDY34141.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00056110001	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDBCC9	SEG:seg

Description

BnaC01g28810DBnaC01g28810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H8M3]

Coordinates

chrLK032329:-:393321..395197

Molecular Weight (calculated)

55996.7 Da

IEP (calculated)

8.789

GRAVY (calculated)

-0.424

Length

492 amino acids

Sequence
(BLAST)

001: MALRHLSRPR DIVKRSTKKY LEEPLYHRLF KDGGSEVSVR QQLNQFLKGT KHVFKWEVGD TIKKLRSRGL YYPALKLSEV MEHRGLNKTV SDQAIHLDLV
101: AKARGIAAGE TYFVNLPETS KTELTYASLL NCYCKELMTE KAEGLLNKMK ELNITVSSMS YNSLMTLYTK TGQAERVPGM VQEMKAENVM PDSYTYNVWM
201: RALAATDDVS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DARLSEKAEK ALQELEMKNT DRDFKAYQFL ITLYGRLGKL TEVYRIWRSL RLAMPKTSNV
301: AYLNMIQVLV NLKDVTGAET LFKEWQANCT TYDIRVVNVM IGAYAKEVLI EKAKELKEKA PRRGGKPNAK TWEIFMDYYV KSCDTAHALE CISKAVSIGK
401: GDGGKWLPSQ EAISSLMIQF EEKKDVNGAE NLLEILKKGT DDSIGAEIFE SLVRTYAAAG KSHPAMRQRL KMEKVEVNEA TQKLLDELCH EE

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.