Factsheet for Os04t0320200-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

mitochondrion: 19010998

msms PMID: 19010998 doi

S Huang, NL Taylor, R Narsai, H Eubel, J Whelan, AH Millar

Australian Research Council Centre of Excellence in Plant Energy Biology, M316, University of Western Australia, Crawley, 6009 Western Australia, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G061300.1	Wheat	cytosol, mitochondrion, nucleus, plastid	86.07	83.99
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	85.69	83.61
TraesCS4A01G428500.1	Wheat	mitochondrion	85.5	83.12
EER87766	Sorghum	cytosol	84.35	82.46
HORVU7Hr1G011310.1	Barley	cytosol, mitochondrion, nucleus	86.26	82.03
Zm00001d045492_P004	Maize	cytosol	84.73	74.5
GSMUA_Achr1P16170_001	Banana	cytosol	66.22	71.25
CDY24553	Canola	mitochondrion	36.07	65.62
CDY50357	Canola	mitochondrion	23.86	62.5
VIT_00s0394g00020.t01	Wine grape	cytosol	58.02	62.17
KRH45616	Soybean	nucleus	57.25	61.22
AT1G60770.1	Thale cress	cytosol	56.87	60.69
CDX96239	Canola	mitochondrion	56.68	60.49
CDY46999	Canola	mitochondrion	56.68	60.49
Bra027131.1-P	Field mustard	mitochondrion	56.11	59.88
Bra031484.1-P	Field mustard	mitochondrion	56.11	59.76
CDY34141	Canola	mitochondrion	55.92	59.55
Solyc11g006380.1.1	Tomato	cytosol	54.96	58.54
PGSC0003DMT400002590	Potato	cytosol	54.77	58.33
KRG99413	Soybean	cytosol, mitochondrion	36.45	54.42
CDY50358	Canola	cytosol	23.09	51.49
CDY24554	Canola	cytosol	14.69	50.33
Os01t0301000-01	Rice	mitochondrion	33.21	33.33
Os01t0301700-01	Rice	mitochondrion	30.53	31.75
Os01t0301500-01	Rice	cytosol, mitochondrion	27.29	29.55
Os07t0598500-01	Rice	mitochondrion	28.05	29.05
Os04t0544400-00	Rice	plastid	27.86	28.57
Os04t0450200-01	Rice	cytosol	15.84	28.42
Os12t0527900-01	Rice	mitochondrion	27.48	28.02
Os10t0501300-01	Rice	mitochondrion	25.38	25.93
Os02t0796400-00	Rice	mitochondrion	25.57	25.92
Os10t0501000-01	Rice	cytosol	21.76	25.28
Os01t0280400-00	Rice	mitochondrion	24.05	20.62
Os10t0501200-00	Rice	mitochondrion	24.62	20.61
Os12t0170100-01	Rice	mitochondrion	23.28	19.97
Os07t0222700-01	Rice	mitochondrion	2.1	5.56

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4335473	EMBL:AK119256	ProteinID:BAF14372.1	ProteinID:BAS88572.1
ProteinID:CAE01505.2	ProteinID:CAE04700.1	ProteinID:EAZ30246.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os04g0320200	EnsemblPlants:Os04t0320200-01	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF494	InterPro:Pentatricopeptide_repeat	UniProt:Q7XTG6	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00001B0BD4	RefSeq:XP_015636955.1	SEG:seg	:

Description

Tetratricopeptide-like helical domain containing protein. (Os04t0320200-01)

Coordinates

chr4:-:14718535..14722074

Molecular Weight (calculated)

59986.6 Da

IEP (calculated)

9.781

GRAVY (calculated)

-0.493

Length

524 amino acids

Sequence
(BLAST)

001: MATRVKDVAR RSSKKYVDEA LYRRLFRRGS TPQAVREEVD GFLDSRKRAF KWEVGVCVRR LRKQALYRPA LKLSEVMARR GMNPTVSDQA IRLDLVAKSR
101: GIAAAEKYFL DLPETSKTHL TYGALLNCYC KDLMTEKAEA LMGKMKELNF AFTAMCYNSL MTLYTKVNQH EKVPSVIQDM KADDVLPDIY TYNVWMRALA
201: ARVDIKGVER VIEEMKRDGR VTPDWTTYSN LASIYVDAGL FEKAEAALKE LEKWNTSNDL EAYQFLITLY ARTQNLVEVH RVWRSLKRNQ PRRANMSYLN
301: MIQALANLKD LPGAEACFKE WEAQYINPPK TNTKAPGTAE TSSNESDVKA TKDKGTDGEL KHPKYDIRVA NAMIKAYITE GMFDKAVAVK KRAKMRGGRL
401: NAKTWEIFME HYLKEGDLKM VHWCADRAIK KGHSAGRIWV PPHEVTETLM DYFEKNKDVD GAEKFVEVLK KVQKDLGTVV FEPLVRTYAA AGKKLPGMRH
501: RLKIENVEVS EETAKLLDSV CIDQ

Best Arabidopsis Sequence Match ( AT1G60770.1 )
(BLAST)

001: MAMRHLSRSR DVTKRSTKKY IEEPLYNRLF KDGGTEVKVR QQLNQFLKGT KHVFKWEVGD TIKKLRNRGL YYPALKLSEV MEERGMNKTV SDQAIHLDLV
101: AKAREITAGE NYFVDLPETS KTELTYGSLL NCYCKELLTE KAEGLLNKMK ELNITPSSMS YNSLMTLYTK TGETEKVPAM IQELKAENVM PDSYTYNVWM
201: RALAATNDIS GVERVIEEMN RDGRVAPDWT TYSNMASIYV DAGLSQKAEK ALQELEMKNT QRDFTAYQFL ITLYGRLGKL TEVYRIWRSL RLAIPKTSNV
301: AYLNMIQVLV KLNDLPGAET LFKEWQANCS TYDIRIVNVL IGAYAQEGLI QKANELKEKA PRRGGKLNAK TWEIFMDYYV KSGDMARALE CMSKAVSIGK
401: GDGGKWLPSP ETVRALMSYF EQKKDVNGAE NLLEILKNGT DNIGAEIFEP LIRTYAAAGK SHPAMRRRLK MENVEVNEAT KKLLDEVSQD V

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g60770 [Source:UniProtKB/Swiss-Prot;Acc:O22714]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.