Factsheet for Os01t0301500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0301000-01	Rice	mitochondrion	60.54	56.13
Zm00001d009122_P001	Maize	mitochondrion	54.96	51.65
EES02848	Sorghum	mitochondrion	55.58	50.75
TraesCS2A01G552700.1	Wheat	mitochondrion	54.34	47.73
TraesCS2B01G584000.2	Wheat	mitochondrion	54.34	47.56
TraesCS2D01G553300.1	Wheat	mitochondrion	54.96	47.5
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	46.28	44.71
GSMUA_Achr11P...	Banana	mitochondrion	41.74	38.92
VIT_07s0005g01630.t01	Wine grape	mitochondrion	34.71	35.59
PGSC0003DMT400023279	Potato	mitochondrion	33.88	33.13
CDY15237	Canola	mitochondrion	33.47	31.58
CDX89976	Canola	mitochondrion	33.26	31.26
Bra033321.1-P	Field mustard	mitochondrion	33.26	31.26
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	31.2	31.13
KRH31780	Soybean	mitochondrion	29.75	30.25
KRH69203	Soybean	cytosol	24.17	30.08
CDX91822	Canola	mitochondrion	30.79	29.8
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.58	29.72
Bra000902.1-P	Field mustard	mitochondrion	30.58	29.54
CDX90962	Canola	mitochondrion	30.37	29.34
AT4G01990.1	Thale cress	mitochondrion	30.17	29.08
Os01t0301700-01	Rice	mitochondrion	29.75	28.57
AT1G02370.1	Thale cress	mitochondrion	31.2	28.12
Solyc01g100580.2.1	Tomato	mitochondrion	27.89	28.01
PGSC0003DMT400007271	Potato	mitochondrion	27.48	27.54
Os04t0320200-01	Rice	mitochondrion	29.55	27.29
Os04t0544400-00	Rice	plastid	27.27	25.83
Os12t0527900-01	Rice	mitochondrion	25.21	23.74
Os10t0501300-01	Rice	mitochondrion	24.38	23.0
Os04t0450200-01	Rice	cytosol	13.84	22.95
Os10t0501000-01	Rice	cytosol	20.87	22.39
Os07t0598500-01	Rice	mitochondrion	22.52	21.54
Os02t0796400-00	Rice	mitochondrion	22.52	21.08
Os10t0501200-00	Rice	mitochondrion	24.59	19.01
Os01t0280400-00	Rice	mitochondrion	17.98	14.24
Os12t0170100-01	Rice	mitochondrion	17.56	13.91
Os07t0222700-01	Rice	mitochondrion	3.51	8.59

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4325784	ProteinID:BAD87829.1	ProteinID:BAF04737.1	ProteinID:BAS71721.1
ProteinID:EEE54409.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os01g0301500
EnsemblPlants:Os01t0301500-01	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504
InterPro:Pentatricopeptide_repeat	UniProt:Q5JL28	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00004C2ABF
RefSeq:XP_015647253.1	SEG:seg	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os01t0301500-01)

Coordinates

chr1:-:11078206..11083482

Molecular Weight (calculated)

55563.8 Da

IEP (calculated)

7.675

GRAVY (calculated)

-0.490

Length

484 amino acids

Sequence
(BLAST)

001: MAPPTPGLSA AARLVIRRFL TTGAEAAEAV APHAARAKGK KDKRPLGRRL LELGDAAGEG SVSRVLDEWV REGREEAIAA ADLAKCARDL HKVKRDAHAL
101: ELMDWMVNTK GMSMTYARYA LHLELLYSVY GIEAAEEYFS GIPSFTRDQN HRTYGALLNC YCSAKMEEKA TNIYRRMDEL GIPSSTKLMN NLMGLYLELG
201: QHSKVANLFD EMKERNVQPD ELTCCILMRS HAAHNKIDTV KETFYNMSLL DVPKQWSIFR TLGSIYMNAG MVEEAELAFM RAQEFLGFDH GRHPFYFLMR
301: QFASIGNLRG VNRVWKDIKM TFSYNRTNFS YLLMLQCLYK LGDTDRMKEI YKEWEYRYEN YDPRLTNMLT RAHLRNGMTN EAELLWEKVK ERGGDFDFET
401: CELFREHYLG KGDTTSALKW AEKMTKLPKK QGKQDQETCK FLKWFEEDKV VEGAKSTCNC SNCLRNADSK TCEPLLAPAD LLPD

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.