Factsheet for TraesCS2D01G553300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G552700.1	Wheat	mitochondrion	95.36	96.91
TraesCS2B01G584000.2	Wheat	mitochondrion	95.0	96.2
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	72.86	81.44
Os01t0301000-01	Rice	mitochondrion	70.0	75.1
Zm00001d009122_P001	Maize	mitochondrion	68.75	74.76
EES02848	Sorghum	mitochondrion	68.57	72.45
GSMUA_Achr11P...	Banana	mitochondrion	51.07	55.11
Os01t0301500-01	Rice	cytosol, mitochondrion	47.5	54.96
VIT_07s0005g01630.t01	Wine grape	mitochondrion	36.79	43.64
PGSC0003DMT400023279	Potato	mitochondrion	37.14	42.02
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	34.11	39.38
CDY15237	Canola	mitochondrion	35.89	39.18
TraesCS6D01G079300.1	Wheat	mitochondrion	35.54	39.1
Bra033321.1-P	Field mustard	mitochondrion	35.71	38.84
CDX89976	Canola	mitochondrion	35.54	38.64
CDX91822	Canola	mitochondrion	34.11	38.2
AT4G01990.1	Thale cress	mitochondrion	34.11	38.05
TraesCS6D01G079100.1	Wheat	mitochondrion	32.5	38.0
CDX90962	Canola	mitochondrion	33.93	37.92
Bra000902.1-P	Field mustard	mitochondrion	33.75	37.72
KRH31780	Soybean	mitochondrion	31.96	37.6
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	33.21	37.35
KRH69203	Soybean	cytosol	25.89	37.28
TraesCS6D01G079200.1	Wheat	plastid	35.71	36.97
AT1G02370.1	Thale cress	mitochondrion	34.82	36.31
TraesCS2D01G553100.1	Wheat	mitochondrion	34.64	35.6
TraesCS6D01G079400.1	Wheat	plastid	26.61	33.04
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	31.43	32.77
Solyc01g100580.2.1	Tomato	mitochondrion	28.04	32.57
PGSC0003DMT400007271	Potato	mitochondrion	27.86	32.3
TraesCS1D01G166700.1	Wheat	mitochondrion	27.14	30.71
TraesCS1D01G166800.1	Wheat	mitochondrion	27.68	30.33
TraesCS5D01G112000.1	Wheat	mitochondrion	26.96	29.61
TraesCS2D01G389900.1	Wheat	plastid	25.54	27.98
TraesCS2D01G315700.1	Wheat	mitochondrion	20.0	25.4
TraesCS6D01G341400.1	Wheat	mitochondrion	23.57	25.38
TraesCS3D01G195000.1	Wheat	mitochondrion	22.5	20.55
TraesCS7D01G293300.1	Wheat	mitochondrion	17.5	19.1

Protein Annotations

EnsemblPlants:TraesCS2D01G553300.1	EnsemblPlantsGene:TraesCS2D01G553300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF504	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:628159162..628162006

Molecular Weight (calculated)

62530.3 Da

IEP (calculated)

9.083

GRAVY (calculated)

-0.504

Length

560 amino acids

Sequence
(BLAST)

001: MAALTPSAGA RLLRRLLSTA AEVAREAPAP AAKNTKKAAA RPVRKRAARA VAPQDAKEAA EAAPDAEGAK KAAEAAPDAE GAKKAAAAGT KDSRPLYRRL
101: SALGNAGEGS VSAVMNKWLR EGRETRSVDL ERYVKELRKY KRHSQALELM DWMVHTKGMN MSYTNHAIRL DLIYKVRGIE AAEKYFDGLP DPAKNHRTYG
201: ALLNCYCSSK KEEKATDLYR KMDELGISSS TLPINNLMSL YMKLGQHKKV CSLFEEMKEK NVKPDNLTCC ILMTSCAALN KIDDVEQVLK EMEEKGGVLG
301: WSAYSTLASI YQSAGLVEKA ESALKKLEGL VQDRDGRQPF DFLMSLYASV GNLSEVKRVW GVVKDTFPKV TNTSYFSMLQ ALLKLNDADY MKQVFEEWES
401: NHECYDVKLT NVMTRAHLKN GMAKEAEQLW EKAKEMGACF DSKTCELFLD HYMGTGDMKS ALNWVENVTK LPKKAGKLDP DKIPKFSKYF EEQKDVQGAE
501: RFCNCLRALG CMDGKAYESL LRTYLAAGET SRSLRQQIKD DKIEICYDIG KLLKRLGEGR

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.