Factsheet for TraesCS6D01G079400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G091200.2	Wheat	cytosol	76.94	95.07
TraesCS6D01G079300.1	Wheat	mitochondrion	82.48	73.08
HORVU6Hr1G016390.10	Barley	plastid	81.37	66.01
TraesCS6D01G079200.1	Wheat	plastid	77.16	64.33
TraesCS6D01G079100.1	Wheat	mitochondrion	63.86	60.13
TraesCS2D01G553100.1	Wheat	mitochondrion	49.0	40.55
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	29.93	27.84
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	30.16	27.31
PGSC0003DMT400023279	Potato	mitochondrion	29.93	27.27
VIT_07s0005g01630.t01	Wine grape	mitochondrion	28.16	26.91
TraesCS2D01G553300.1	Wheat	mitochondrion	33.04	26.61
AT4G01990.1	Thale cress	mitochondrion	28.82	25.9
KRH31780	Soybean	mitochondrion	26.83	25.42
Bra000902.1-P	Field mustard	mitochondrion	28.16	25.35
CDX90962	Canola	mitochondrion	28.16	25.35
CDX91822	Canola	mitochondrion	27.94	25.2
Bra033321.1-P	Field mustard	mitochondrion	28.6	25.05
KRH69203	Soybean	cytosol	21.51	24.94
CDX89976	Canola	mitochondrion	27.94	24.47
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	29.05	24.39
CDY15237	Canola	mitochondrion	27.49	24.17
Solyc01g100580.2.1	Tomato	mitochondrion	24.17	22.61
AT1G02370.1	Thale cress	mitochondrion	26.83	22.53
PGSC0003DMT400007271	Potato	mitochondrion	23.73	22.15
TraesCS1D01G166800.1	Wheat	mitochondrion	23.95	21.14
TraesCS5D01G112000.1	Wheat	mitochondrion	23.5	20.78
TraesCS2D01G389900.1	Wheat	plastid	23.5	20.74
TraesCS1D01G166700.1	Wheat	mitochondrion	21.06	19.19
TraesCS6D01G341400.1	Wheat	mitochondrion	21.29	18.46
TraesCS2D01G315700.1	Wheat	mitochondrion	17.52	17.91
TraesCS3D01G195000.1	Wheat	mitochondrion	21.06	15.5
TraesCS7D01G293300.1	Wheat	mitochondrion	16.19	14.23

Protein Annotations

EnsemblPlants:TraesCS6D01G079400.1	EnsemblPlantsGene:TraesCS6D01G079400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF942
PFAM:PF01535	PFAM:PF13041	PFscan:PS51257	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:45478019..45481431

Molecular Weight (calculated)

50682.1 Da

IEP (calculated)

7.221

GRAVY (calculated)

-0.272

Length

451 amino acids

Sequence
(BLAST)

001: MYAPVRSGDQ SGQSASVWVF ACSQAPMLRT AIAAAPRPRI SLAPARFAHE LAQAQAQSAV PGRDDLDPSW VPLYRTISRL YGRPPGMVAA EMDNYLRKRR
101: PLSADQIVAY VRKLRKFKSN ACALELMDWM ESRGAKLTLE HQALRLGLVS KVHGLQAAEE YFWSLPDKSK ETYSCLLNCY GEHGMACKGL ELYEKMKVMD
201: IVPNTLLYNS LMTLYQKAGQ PEKIPSTFEE MRESGISANN FTYFTLIESY ITMNDLEAAE KVLEELEKVA PVHWSLYTLM ANSYIKLELF GKSEVALKKA
301: EEVMDKAELL SILAIQPSKF FRSGNGGHCN GRTVYVFAEF YLDKSDVTAA LEILRDAKKM LTAHKWVPSE KLTSRFLKHY EESKDVDGVE SFCDRLKKLE
401: CLDAEAYEGM VRTYIAAGRT IPSIGQRIED DGIHVGPEMT KLLESVSGNS K

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.