Factsheet for TraesCS3D01G195000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G220600.2	Wheat	mitochondrion	99.18	99.18
TraesCS3A01G191200.1	Wheat	mitochondrion	97.88	98.04
HORVU3Hr1G040710.1	Barley	mitochondrion	93.8	93.95
Os12t0170100-01	Rice	mitochondrion	72.1	72.34
Os01t0280400-00	Rice	mitochondrion	71.94	72.18
OQU86720	Sorghum	mitochondrion	68.68	68.68
Zm00001d040475_P001	Maize	mitochondrion	67.21	67.21
Zm00001d008224_P002	Maize	mitochondrion	66.88	65.92
GSMUA_Achr8P21680_001	Banana	mitochondrion	56.44	55.99
GSMUA_Achr5P27560_001	Banana	cytosol	46.82	55.95
KRH66764	Soybean	cytosol	37.19	54.94
VIT_08s0007g05090.t01	Wine grape	mitochondrion	52.2	51.28
GSMUA_Achr11P...	Banana	mitochondrion	50.57	49.36
KRH69049	Soybean	mitochondrion	47.31	47.62
PGSC0003DMT400022632	Potato	mitochondrion	48.45	47.6
Solyc12g020050.1.1	Tomato	plastid	48.29	47.44
CDY57695	Canola	mitochondrion	46.49	47.26
KRG95098	Soybean	mitochondrion	46.98	47.21
KRH31614	Soybean	mitochondrion	46.17	47.17
AT1G80270.2	Thale cress	mitochondrion	45.35	46.64
AT1G15480.1	Thale cress	mitochondrion	44.37	45.79
CDY39654	Canola	mitochondrion	44.7	45.59
AT3G15590.2	Thale cress	cytosol, mitochondrion	41.44	41.64
PGSC0003DMT400021596	Potato	mitochondrion	41.6	41.6
Bra003559.1-P	Field mustard	cytosol	46.17	39.75
Bra027226.1-P	Field mustard	plastid	38.17	38.87
CDX97686	Canola	plastid	37.68	37.26
CDY30088	Canola	plastid	37.19	36.95
Bra026128.1-P	Field mustard	cytosol	44.7	29.43
CDX79395	Canola	cytosol	46.49	27.8
TraesCS7D01G293300.1	Wheat	mitochondrion	21.37	25.54
TraesCS5D01G112000.1	Wheat	mitochondrion	19.9	23.92
TraesCS1D01G166700.1	Wheat	mitochondrion	18.76	23.23
TraesCS6D01G341400.1	Wheat	mitochondrion	19.58	23.08
TraesCS7D01G056000.1	Wheat	cytosol, mitochondrion, nucleus, plastid	20.07	22.91
TraesCS2D01G553300.1	Wheat	mitochondrion	20.55	22.5
TraesCS1D01G166800.1	Wheat	mitochondrion	18.6	22.31
TraesCS6D01G079300.1	Wheat	mitochondrion	18.27	22.0
TraesCS6D01G079200.1	Wheat	plastid	19.25	21.81
TraesCS6D01G079100.1	Wheat	mitochondrion	16.97	21.71
TraesCS2D01G389900.1	Wheat	plastid	17.94	21.53
TraesCS6D01G079400.1	Wheat	plastid	15.5	21.06
TraesCS2D01G553100.1	Wheat	mitochondrion	16.8	18.9
TraesCS2D01G315700.1	Wheat	mitochondrion	13.54	18.82

Protein Annotations

EnsemblPlants:TraesCS3D01G195000.1	EnsemblPlantsGene:TraesCS3D01G195000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:PPR_long	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF26	PFAM:PF13812	PFAM:PF17177	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:16.12.5.4.19	:	:	:	:

Description

No Description!

Coordinates

chr3D:+:188354501..188357390

Molecular Weight (calculated)

68772.5 Da

IEP (calculated)

7.852

GRAVY (calculated)

-0.406

Length

613 amino acids

Sequence
(BLAST)

001: MWALRRAANP LRVSARQVAS VRGCASLDVL LSADAKNAEQ HSEQGCQKSC CCSTPKPPAC RLPFSSGWST WSRSFSSQTG ANSGDKVDDL EDGFSDLEVP
101: PEADKKDVEL PSEESSDDDA VDGIGLSGDD ADAKPDKEPM KKASQSPLLK VMLEAPRNGV SGTLKKWLDG GNTFDRSDIF YVIMNLRKRK FYFKALQLLE
201: WLEDSKVIDL GERDYASRLD LVAKVHGVYK AEKYIDSIPI SHRGEIVYRT LLANCVSEAN VKKSEEVFNK MKDLGFPVTV FAINQLLLLY KRVDKKKIAD
301: VLAKMEKENV KPSLFTYKLL VDTKGAIRDI AGMEKVVESM QAEGVEPDLL FQATIAKHYI FAGHREKAEA ILESMEGGDI KGNRNACKIL LPLYAFLGKK
401: DDVERMWQVC EANPRLDECL SAIESFGRLG DVERAEKVFE DMFATWKTLS SKFYNALMKV YADQNLFKKG KELAKRMDED GCRLGISTID SLVKLYVGAG
501: EVDKAESILH KLSKSNKMKP QYSSYLMLLD TYSKKGDIHN SEKVFDQLRQ MGYNGRVRQY QLLLNAYVHA KTPVYGFRER MKADNIFPNS VIASLLAATD
601: PFNKKKTLSD MLE

Best Arabidopsis Sequence Match ( AT1G80270.4 )
(BLAST)

001: MFALSKVLRR TQRLRLGACS AVFSKDIQLG GERSFDSNSI ASTKREAVPR FYEISSLSNR ALSSSAGTKS DQEEDDLEDG FSELEGSKSG QGSTSSDEDE
101: GKLSADEEEE EELDLIETDV SRKTVEKKQS ELFKTIVSAP GLSIGSALDK WVEEGNEITR VEIAKAMLQL RRRRMYGRAL QMSEWLEANK KIEMTERDYA
201: SRLDLTVKIR GLEKGEACMQ KIPKSFKGEV LYRTLLANCV AAGNVKKSEL VFNKMKDLGF PLSGFTCDQM LLLHKRIDRK KIADVLLLME KENIKPSLLT
301: YKILIDVKGA TNDISGMEQI LETMKDEGVE LDFQTQALTA RHYSGAGLKD KAEKVLKEME GESLEANRRA FKDLLSIYAS LGREDEVKRI WKICESKPYF
401: EESLAAIQAF GKLNKVQEAE AIFEKIVKMD RRASSSTYSV LLRVYVDHKM LSKGKDLVKR MAESGCRIEA TTWDALIKLY VEAGEVEKAD SLLDKASKQS
501: HTKLMMNSFM YIMDEYSKRG DVHNTEKIFL KMREAGYTSR LRQFQALMQA YINAKSPAYG MRDRLKADNI FPNKSMAAQL AQGDPFKKTA ISDILD

Arabidopsis Description

PPR596PPR596 [Source:UniProtKB/TrEMBL;Acc:A0A178W3Z6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.