Factsheet for Bra027226.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97686	Canola	plastid	97.01	94.19
CDY30088	Canola	plastid	95.02	92.71
AT3G15590.2	Thale cress	cytosol, mitochondrion	78.24	77.21
KRH66764	Soybean	cytosol	34.72	50.36
GSMUA_Achr5P27560_001	Banana	cytosol	39.04	45.81
KRH31614	Soybean	mitochondrion	45.51	45.67
KRH69049	Soybean	mitochondrion	46.01	45.48
GSMUA_Achr8P21680_001	Banana	mitochondrion	44.19	43.04
KRG95098	Soybean	mitochondrion	42.86	42.3
Solyc12g020050.1.1	Tomato	plastid	43.19	41.67
PGSC0003DMT400022632	Potato	mitochondrion	43.19	41.67
VIT_08s0007g05090.t01	Wine grape	mitochondrion	42.69	41.19
HORVU3Hr1G040710.1	Barley	mitochondrion	39.37	38.73
PGSC0003DMT400021596	Potato	mitochondrion	39.2	38.5
TraesCS3B01G220600.2	Wheat	mitochondrion	38.87	38.17
TraesCS3D01G195000.1	Wheat	mitochondrion	38.87	38.17
Os01t0280400-00	Rice	mitochondrion	38.54	37.97
TraesCS3A01G191200.1	Wheat	mitochondrion	38.54	37.91
GSMUA_Achr11P...	Banana	mitochondrion	39.2	37.58
Os12t0170100-01	Rice	mitochondrion	37.38	36.82
OQU86720	Sorghum	mitochondrion	36.88	36.22
Zm00001d040475_P001	Maize	mitochondrion	36.54	35.89
Bra003559.1-P	Field mustard	cytosol	42.36	35.81
Zm00001d008224_P002	Maize	mitochondrion	36.54	35.37
Bra026128.1-P	Field mustard	cytosol	41.69	26.96
Bra031484.1-P	Field mustard	mitochondrion	19.1	23.37
Bra027131.1-P	Field mustard	mitochondrion	18.94	23.22
Bra011054.1-P	Field mustard	mitochondrion	13.12	23.17
Bra036673.1-P	Field mustard	mitochondrion	18.27	23.01
Bra020588.1-P	Field mustard	mitochondrion	17.77	21.79
Bra038762.1-P	Field mustard	mitochondrion	17.44	21.52
Bra036629.1-P	Field mustard	mitochondrion	16.94	21.38
Bra000902.1-P	Field mustard	mitochondrion	17.61	21.16
Bra018528.1-P	Field mustard	mitochondrion	17.94	21.01
Bra031586.1-P	Field mustard	mitochondrion	18.27	20.72
Bra028632.1-P	Field mustard	mitochondrion	13.46	20.05
Bra033321.1-P	Field mustard	mitochondrion	16.61	19.42
Bra033215.1-P	Field mustard	mitochondrion	15.95	18.75
Bra036496.1-P	Field mustard	plastid	14.12	17.53
Bra032862.1-P	Field mustard	mitochondrion	10.8	17.15
Bra032863.1-P	Field mustard	mitochondrion	10.63	16.0
Bra032865.1-P	Field mustard	cytosol	14.12	14.81
Bra001400.1-P	Field mustard	mitochondrion, plastid	18.11	14.55
Bra032866.1-P	Field mustard	mitochondrion	11.13	10.5

Protein Annotations

EnsemblPlants:Bra027226.1	EnsemblPlants:Bra027226.1-P	EnsemblPlantsGene:Bra027226	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1592
PFAM:PF13812	PFscan:PS51375	UniParc:UPI0002547A15	UniProt:M4EEL4	MapMan:16.12.5.4.19	:

Description

AT3G15590 (E=4e-270) | DNA-binding protein, putative

Coordinates

chrA05:+:19800471..19802371

Molecular Weight (calculated)

68333.6 Da

IEP (calculated)

9.304

GRAVY (calculated)

-0.358

Length

602 amino acids

Sequence
(BLAST)

001: MYSITKILRR SSRFNLAPSS FGAVSKLEIP TGTKESAFRA SGLNFSNQSQ GLVRRYSVRD VFSRFIGINK LSSVADVKGD EEEKEAFPVS RDVAEGVEDD
101: SVFDSELGSD SEACDDGLEV EIEHSNKGKA KKTRGRCELY DSIVAYKSVK HVLEQWVKEG KDLSQAEVSL AVHNLRKRRS YAMCLQLWEW LRANTQFEFT
201: EANYASQLDL VAKVHSLQKA EAFLNDIPES SRGEVVYRTL LANCVLKLHV KRAEDLFNKM RELKFPTSVF ACNQLLLLYS KHDRKKIPDV LLLMEKENIK
301: PTRGTYQFLI NSKGLSGDIA GMDKLVETMK EEGIKLDPEI QAAVARYYIR AGRKERAEEV MKEIEGEGLD QAPWVCRSLL PLYAEIGDKE NVRRLSRFVE
401: QALRYDNSIA AIKAWGKLKE IEEAEAVFDK LVEKYKLVPM LPYFSLMEIY TENKMLTKGK NLVKRIASAG VKIGPSTWHA LVKLYIKAGE VGKGEMILNK
501: ATKDNKMRPL FISYMVILEE YAKRGDVHNA EKVFMRMKRA GYAAQLMQYE TVLLAYVNAK TPAYGMSERM KVDNVFPNKS LAAKLAHVDP FRKNPVSVLL
601: DE

Best Arabidopsis Sequence Match ( AT3G15590.2 )
(BLAST)

001: MYSLSRILQR SQRYNFAPSS FGAVSKLEVS SGGDKERVFK SFGLIYSKPQ GLVRLYSARD VFSRFFGIHK LSSIADAKDK GDEVVREEEL SESEEAVPVS
101: GDVPEGVVDD DSLFEPELGS DNDDLEIEEK HSKDGGKPTK KRGQSELYES IVAYKSVKHV LEKWVKEGKD LSQAEVTLAI HNLRKRKSYA MCLQLWEWLG
201: ANTQFEFTEA NYASQLDLVA KVHSLQKAEI FLKDIPESSR GEVVYRTLLA NCVLKHHVNK AEDIFNKMKE LKFPTSVFAC NQLLLLYSMH DRKKISDVLL
301: LMERENIKPS RATYHFLINS KGLAGDITGM EKIVETIKEE GIELDPELQS ILAKYYIRAG LKERAQDLMK EIEGKGLQQT PWVCRSLLPL YADIGDSDNV
401: RRLSRFVDQN PRYDNCISAI KAWGKLKEVE EAEAVFERLV EKYKIFPMMP YFALMEIYTE NKMLAKGRDL VKRMGNAGIA IGPSTWHALV KLYIKAGEVG
501: KAELILNRAT KDNKMRPMFT TYMAILEEYA KRGDVHNTEK VFMKMKRASY AAQLMQYETV LLAYINAKTP AYGMIERMKA DNVFPNKSLA AKLAQVNPFK
601: KCPVSVLLDI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g15590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LRP6]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.