Factsheet for Bra032862.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 3
mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27645	Canola	mitochondrion	64.91	94.98
Bra032863.1-P	Field mustard	mitochondrion	82.32	78.0
AT1G28000.1	Thale cress	mitochondrion	61.74	60.31
Bra011054.1-P	Field mustard	mitochondrion	29.02	32.26
Bra036673.1-P	Field mustard	mitochondrion	29.55	23.43
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	26.12	19.88
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	25.86	19.88
Bra036496.1-P	Field mustard	plastid	25.33	19.79
Bra028632.1-P	Field mustard	mitochondrion	19.79	18.56
Bra001400.1-P	Field mustard	mitochondrion, plastid	35.62	18.02
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	23.48	17.84
KRH26940	Soybean	cytosol	23.22	17.74
KRH22399	Soybean	cytosol	21.9	17.44
Bra038762.1-P	Field mustard	mitochondrion	22.43	17.42
Bra018528.1-P	Field mustard	mitochondrion	22.69	16.73
Bra033215.1-P	Field mustard	mitochondrion	22.16	16.41
Bra032865.1-P	Field mustard	cytosol	24.8	16.38
GSMUA_Achr5P20750_001	Banana	mitochondrion	22.69	15.75
TraesCS1B01G188200.1	Wheat	mitochondrion	20.05	15.45
Os10t0501300-01	Rice	mitochondrion	20.84	15.4
Bra036629.1-P	Field mustard	mitochondrion	19.26	15.3
OQU91552	Sorghum	mitochondrion	20.32	15.1
Zm00001d032543_P001	Maize	mitochondrion	20.58	15.09
TraesCS1D01G166700.1	Wheat	mitochondrion	19.53	14.95
Bra020588.1-P	Field mustard	mitochondrion	19.26	14.87
Os10t0501000-01	Rice	cytosol	17.41	14.63
Solyc07g054100.1.1	Tomato	cytosol	12.4	14.55
Bra027131.1-P	Field mustard	mitochondrion	18.73	14.46
PGSC0003DMT400047256	Potato	extracellular	12.14	14.24
Bra031484.1-P	Field mustard	mitochondrion	18.21	14.02
Bra033321.1-P	Field mustard	mitochondrion	18.21	13.4
TraesCS1A01G168700.1	Wheat	mitochondrion	20.32	13.18
Os10t0501200-00	Rice	mitochondrion	21.37	12.94
Bra000902.1-P	Field mustard	mitochondrion	15.83	11.98
Bra027226.1-P	Field mustard	plastid	17.15	10.8
Bra031586.1-P	Field mustard	mitochondrion	15.04	10.73
Bra032866.1-P	Field mustard	mitochondrion	17.68	10.5
Bra003559.1-P	Field mustard	cytosol	17.68	9.41
Bra026128.1-P	Field mustard	cytosol	18.47	7.52

Protein Annotations

EnsemblPlants:Bra032862.1	EnsemblPlants:Bra032862.1-P	EnsemblPlantsGene:Bra032862	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	PFAM:PF01535	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0002542526	UniProt:M4EVM9	MapMan:35.1	:	:	:

Description

AT1G28000 (E=2e-107) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 219 Blast hits to 213 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrA09:+:12346954..12348184

Molecular Weight (calculated)

41884.0 Da

IEP (calculated)

7.784

GRAVY (calculated)

-0.454

Length

379 amino acids

Sequence
(BLAST)

001: MIQSLGRHSK RFLLFRKTQP IQFLRTVTSA NLNDTLHSRV MAVEKRFLRR VKVTPVLDEW LKQGNETNPT DLRAVINALC QSQRFDHALQ VSEWITKRGV
101: FELSTLDFAY RLYLIEINSA LSEAEKFFKS IPENMKDESV YTTLLSFYTK SKKTRHEAEA TYEKMKEKDL LFIPNPYYEM ISLYGLLGET NMVDEVLRQM
201: EENEVVHDKT LTENNVLKAY ASVPADVEAM EKLFLKRIED ETLPFVLAWQ TGISMAKAYL KCGSSGKAIE MLRRTELVVD AKSKDAASKV LMEMYGEAGA
301: KQDESCLYRR INQNAKQGQR KGSGGRSSHH PGYYGGCGGG GGSRADDNGG GIGADTDGGI GGGCDSGGGG CGGGCGGGS

Best Arabidopsis Sequence Match ( AT1G28000.1 )
(BLAST)

001: MKCLGRYAIK NLLSRRLPSI RFAGTLTSPK LNETSHSRIM ALGREQKKVT PPLDEWLKRG KDLNPAVLRG LINSLCESQR FNHALQVSEW ITKRGIFDLS
101: TEDFASRLCL VEISTGLKEA EKFFKSIPEN MRDDSVHTTL LSLYTISKKT RHEAEATYQT MRVQNMLLKP YPYYSMIYLY ALLGEKNMID EILRQMKENG
201: VEHDKNLTAN NVLKAYASLP DVEAMEMFLM GLEVEEPRFS LAWQTGISIA KAYLKGGSSR KAVEMLRRTE LVVDTKSKDS ANKVLMMMYW DAGAKQDASR
301: LSRLIYPKSK KGKRMKAYDE KIESYGGDSS DPIIFIDNRR DCGSVGDGDG DVDVDVDVDV DDGFSGSSDG GASCGGGGCG GGGCGGGD

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.