Factsheet for Bra032866.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032865.1-P	Field mustard	cytosol	68.97	76.66
AT1G28020.1	Thale cress	cytosol, plastid	33.7	43.52
Bra001400.1-P	Field mustard	mitochondrion, plastid	39.97	34.05
Bra011054.1-P	Field mustard	mitochondrion	11.44	21.41
Bra038762.1-P	Field mustard	mitochondrion	14.89	19.47
Bra036673.1-P	Field mustard	mitochondrion	13.79	18.41
Bra032862.1-P	Field mustard	mitochondrion	10.5	17.68
Os10t0501300-01	Rice	mitochondrion	13.95	17.35
OQU91552	Sorghum	mitochondrion	13.79	17.25
Solyc07g054100.1.1	Tomato	cytosol	8.62	17.03
Bra032863.1-P	Field mustard	mitochondrion	10.5	16.75
PGSC0003DMT400047256	Potato	extracellular	8.46	16.72
GSMUA_Achr5P20750_001	Banana	mitochondrion	13.95	16.3
Os10t0501000-01	Rice	cytosol	11.44	16.19
KRH22399	Soybean	cytosol	12.07	16.18
TraesCS1D01G166700.1	Wheat	mitochondrion	12.54	16.16
KRH26940	Soybean	cytosol	12.54	16.13
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	12.54	16.06
TraesCS1B01G188200.1	Wheat	mitochondrion	12.38	16.06
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	12.54	16.03
Zm00001d032543_P001	Maize	mitochondrion	12.85	15.86
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	12.23	15.82
Bra000902.1-P	Field mustard	mitochondrion	12.38	15.77
Bra018528.1-P	Field mustard	mitochondrion	12.54	15.56
Bra027131.1-P	Field mustard	mitochondrion	11.29	14.66
Bra036496.1-P	Field mustard	plastid	11.13	14.64
Bra036629.1-P	Field mustard	mitochondrion	10.81	14.47
Bra031484.1-P	Field mustard	mitochondrion	10.97	14.23
Bra033215.1-P	Field mustard	mitochondrion	11.29	14.06
Os10t0501200-00	Rice	mitochondrion	13.79	14.06
TraesCS1A01G168700.1	Wheat	mitochondrion	12.85	14.04
Bra020588.1-P	Field mustard	mitochondrion	10.66	13.85
Bra033321.1-P	Field mustard	mitochondrion	10.81	13.4
Bra028632.1-P	Field mustard	mitochondrion	8.15	12.87
Bra031586.1-P	Field mustard	mitochondrion	9.87	11.86
Bra027226.1-P	Field mustard	plastid	10.5	11.13
Bra003559.1-P	Field mustard	cytosol	9.72	8.71
Bra026128.1-P	Field mustard	cytosol	10.97	7.52

Protein Annotations

EnsemblPlants:Bra032866.1	EnsemblPlants:Bra032866.1-P	EnsemblPlantsGene:Bra032866	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR002885	InterPro:IPR011990
InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	PFAM:PF01535	PFscan:PS51375
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002542522	UniProt:M4EVN3	MapMan:35.1	:

Description

AT1G28020 (E=1e-098) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA09:+:12302803..12305062

Molecular Weight (calculated)

73569.9 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.342

Length

638 amino acids

Sequence
(BLAST)

001: MMRILVQHAK LYRSCTLRTL WSSANQTLQH RLTEALDQNA QIIPVLQQWR QQGNQIDPSH VRVIIKKLRD SDQSLQALQV SEWMLDNVVE SNGVAPDSVN
101: VDNVSKLYAS VSDVRAMEKL LTAWEENCGN WSTLEWLITL DMAKACLKDG SQEKAIKLLT STEKLVDPKT FKQAYELLTK LYGDAEKKEE VLRIWNLCNK
201: STEESCDNND YLTVIRTLLK LDAITEAEEF YKVWEYSPLE FDYRIPTMLA SGYRERGMVD EAEKLIMKTL IKNIRMKRPI NPLLDEWGGR MRVSELKCLI
301: KNLHDSNQFS KALQVSEWMD EKRACNIYAE DYAARLHMVE VVLGLEEAEK FFKNIPENMK DYTVYATLLS SYAKSDKHLG KAKVTFEKMR ELGFLMKPSP
401: FNSMLSFPSQ RNMVGEFLRE MEENNVSPDS LIVNKVLRIY AADSNVEAME KFMKKWSGEE GIKLERETMA AVAKAYAKAG SMGKAIEMYG GVAGSEGEVY
501: RLWNEFKKNE ELEDDWWCRL FNKNEKLEGD MYKTVITSLL KLDNVEGAEK VYGEWKPVGP NLDLSIPGLL ISRFCAEGNE LKVGELINSI KGKRNEMHAR
601: MVRDYIARVV TYVAIGVFFF LVVAGRYLTK FWPWILFF

Best Arabidopsis Sequence Match ( AT1G28020.1 )
(BLAST)

001: MVSSFPFVYQ NMLAKRPYGA YQNVITVSMS WLKIHGSCPH RITDALHRNA QIIPVLEQWR QQGNQVNPSH VRVIIKKLRD SDQSLQALQV SEWMSKEKIC
101: NLIPEDFAAR LHLIENVVGL EEAEKFFESI PKNARGDSVY TSLLNSYARS DKTLCKAEAT FQKMRDLGLL LRPVPYNAMM SLYSALKNRE KVEELLLEMK
201: DNDVEADNVT VNNVLKLYSA VCDVTEMEKF LNKWEGIHGI KLEWHTTLDM AKAYLRARSS GKAMKMLRLT EQLVDQKSLK SAYDHLMKLY GEAGNREEVL
301: RVWKLYKSKI GERDNNGYRT VIRSLLKVDD IVGAEEIYKV WESLPLEFDH RIPTMLASGY RDRGMTEKAE KLMNSKTIKD RRMNKPVTPL LEQWGDQMKP
401: SDLKCLIKNL RDSKQFSKAL QVSEWMGEKQ VCNLYLEDYA ARLYLTENVL GLEEAEKYFE NIPENMKDYS VYVALLSSYA KSDKNLGKAM ASRR

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:TAIR;Acc:AT1G28020]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.