Factsheet for Bra032863.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 7
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27647	Canola	mitochondrion	96.5	94.84
Bra032862.1-P	Field mustard	mitochondrion	78.0	82.32
AT1G28000.1	Thale cress	mitochondrion	59.25	61.08
Bra011054.1-P	Field mustard	mitochondrion	28.25	33.14
Bra036673.1-P	Field mustard	mitochondrion	28.75	24.06
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	25.0	20.28
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	24.25	19.48
Bra036496.1-P	Field mustard	plastid	23.5	19.38
Bra028632.1-P	Field mustard	mitochondrion	19.5	19.31
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	23.75	19.04
Bra001400.1-P	Field mustard	mitochondrion, plastid	34.25	18.29
KRH22399	Soybean	cytosol	21.0	17.65
Bra033215.1-P	Field mustard	mitochondrion	22.5	17.58
KRH26940	Soybean	cytosol	21.25	17.14
Bra038762.1-P	Field mustard	mitochondrion	20.75	17.01
GSMUA_Achr5P20750_001	Banana	mitochondrion	22.75	16.67
Bra032865.1-P	Field mustard	cytosol	23.75	16.55
Bra018528.1-P	Field mustard	mitochondrion	20.75	16.15
Os10t0501300-01	Rice	mitochondrion	20.5	15.98
Bra036629.1-P	Field mustard	mitochondrion	18.5	15.51
Bra027131.1-P	Field mustard	mitochondrion	19.0	15.48
TraesCS1B01G188200.1	Wheat	mitochondrion	19.0	15.45
Solyc07g054100.1.1	Tomato	cytosol	12.25	15.17
TraesCS1D01G166700.1	Wheat	mitochondrion	18.75	15.15
OQU91552	Sorghum	mitochondrion	19.25	15.1
Zm00001d032543_P001	Maize	mitochondrion	19.5	15.09
Os10t0501000-01	Rice	cytosol	17.0	15.08
Bra031484.1-P	Field mustard	mitochondrion	18.5	15.04
Bra020588.1-P	Field mustard	mitochondrion	18.0	14.66
PGSC0003DMT400047256	Potato	extracellular	11.75	14.55
TraesCS1A01G168700.1	Wheat	mitochondrion	20.0	13.7
Bra033321.1-P	Field mustard	mitochondrion	17.25	13.4
Bra000902.1-P	Field mustard	mitochondrion	16.75	13.37
Os10t0501200-00	Rice	mitochondrion	20.75	13.26
Bra031586.1-P	Field mustard	mitochondrion	15.0	11.3
Bra027226.1-P	Field mustard	plastid	16.0	10.63
Bra032866.1-P	Field mustard	mitochondrion	16.75	10.5
Bra003559.1-P	Field mustard	cytosol	17.25	9.69
Bra026128.1-P	Field mustard	cytosol	17.75	7.63

Protein Annotations

EnsemblPlants:Bra032863.1	EnsemblPlants:Bra032863.1-P	EnsemblPlantsGene:Bra032863	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	SEG:seg	UniParc:UPI0002542525	UniProt:M4EVN0	MapMan:35.1

Description

AT1G28000 (E=3e-108) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G28020.1); Has 219 Blast hits to 213 proteins in 14 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).

Coordinates

chrA09:+:12341623..12343177

Molecular Weight (calculated)

44429.8 Da

IEP (calculated)

8.575

GRAVY (calculated)

-0.564

Length

400 amino acids

Sequence
(BLAST)

001: MMQSLGQYSK RFLSFRKTQA IIQFTRTLKS AKLNDTLRSR VMAVENRFPF LWRVKVTPVL NEWLKQGNEI NPTDLRAVIK ALCESQRFDY ALQVSEWITK
101: RGVFEISTED VASRLYLIEI HSGLSEAENF FKSIPENMKD DLVYTTLLSF YTKDKETRHE AEATYQKMRE KNLLFKPNPY YKMISLYGLL GETNMVDEIL
201: RQMIENGVQH DITLTSNNVL KAYASVPDVE AMEKFLKRIE YETPPFALAW QTGISMAKAY LKCGSNRKAI EMLRRTEQVV DAKSKDAANK VLMEMYGEAG
301: AKRDEARLYI SQNAKQRQRK GACRCKGSGG RSSHHPGYYY GGCGGGCGSI RGGGDGSRAD DNGGGDGTRA DDNGGGVGAD NDGDGGGGCG GGCGGCGSWD

Best Arabidopsis Sequence Match ( AT1G28000.1 )
(BLAST)

001: MKCLGRYAIK NLLSRRLPSI RFAGTLTSPK LNETSHSRIM ALGREQKKVT PPLDEWLKRG KDLNPAVLRG LINSLCESQR FNHALQVSEW ITKRGIFDLS
101: TEDFASRLCL VEISTGLKEA EKFFKSIPEN MRDDSVHTTL LSLYTISKKT RHEAEATYQT MRVQNMLLKP YPYYSMIYLY ALLGEKNMID EILRQMKENG
201: VEHDKNLTAN NVLKAYASLP DVEAMEMFLM GLEVEEPRFS LAWQTGISIA KAYLKGGSSR KAVEMLRRTE LVVDTKSKDS ANKVLMMMYW DAGAKQDASR
301: LSRLIYPKSK KGKRMKAYDE KIESYGGDSS DPIIFIDNRR DCGSVGDGDG DVDVDVDVDV DDGFSGSSDG GASCGGGGCG GGGCGGGD

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HUV0]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.