Factsheet for GSMUA_Achr5P20750_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU91552	Sorghum	mitochondrion	39.19	41.96
Os10t0501300-01	Rice	mitochondrion	39.38	41.91
Zm00001d032543_P001	Maize	mitochondrion	39.56	41.78
TraesCS1D01G166700.1	Wheat	mitochondrion	37.36	41.21
TraesCS1B01G188200.1	Wheat	mitochondrion	37.0	41.06
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	36.26	39.52
Os10t0501000-01	Rice	cytosol	32.42	39.25
CDY03299	Canola	mitochondrion	30.77	35.52
Solyc02g078330.2.1	Tomato	cytosol, mitochondrion	29.3	35.24
Bra036673.1-P	Field mustard	mitochondrion	30.77	35.15
CDY39781	Canola	mitochondrion	30.77	35.15
AT2G20710.1	Thale cress	mitochondrion	31.14	34.69
TraesCS1A01G168700.1	Wheat	mitochondrion	37.0	34.59
PGSC0003DMT400076352	Potato	cytosol, mitochondrion	30.22	34.52
PGSC0003DMT400058755	Potato	cytosol	24.73	34.18
CDY35213	Canola	cytosol	2.56	34.15
Os10t0501200-00	Rice	mitochondrion	38.28	33.39
KRH22399	Soybean	cytosol	28.75	32.98
GSMUA_AchrUn_...	Banana	cytosol	22.53	32.98
PGSC0003DMT400047256	Potato	extracellular	19.41	32.82
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	29.49	32.33
KRH26940	Soybean	cytosol	29.3	32.26
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	29.12	32.25
GSMUA_Achr1P17120_001	Banana	mitochondrion	30.4	31.92
GSMUA_Achr1P02980_001	Banana	mitochondrion	30.4	31.32
Solyc07g054100.1.1	Tomato	cytosol	18.5	31.27
CDY35212	Canola	mitochondrion	15.57	30.25
GSMUA_Achr1P16170_001	Banana	cytosol	26.01	29.16
GSMUA_Achr11P...	Banana	mitochondrion	27.66	29.09
CDY65573	Canola	mitochondrion	19.6	28.92
Bra011054.1-P	Field mustard	mitochondrion	17.58	28.15
AT1G43010.1	Thale cress	mitochondrion	12.82	27.24
GSMUA_Achr7P12830_001	Banana	mitochondrion	27.11	27.21
GSMUA_Achr10P...	Banana	cytosol	21.79	26.98
AT1G28020.1	Thale cress	cytosol, plastid	23.81	26.32
CDY71968	Canola	plastid	13.92	26.03
CDY27645	Canola	mitochondrion	12.27	25.87
CDY00734	Canola	mitochondrion	8.06	24.86
AT3G11380.1	Thale cress	mitochondrion	23.99	24.21
CDY48421	Canola	mitochondrion	17.22	22.76
Bra032863.1-P	Field mustard	mitochondrion	16.67	22.75
Bra032862.1-P	Field mustard	mitochondrion	15.75	22.69
CDY05786	Canola	plastid	20.15	22.68
CDY31943	Canola	plastid	19.96	22.47
CDY27647	Canola	mitochondrion	16.67	22.36
Bra036496.1-P	Field mustard	plastid	19.78	22.27
GSMUA_Achr9P23230_001	Banana	mitochondrion	20.7	21.65
GSMUA_Achr5P27560_001	Banana	cytosol	20.33	21.64
AT1G28000.1	Thale cress	mitochondrion	15.2	21.39
AT2G20720.1	Thale cress	cytosol	11.54	21.07
AT3G11350.1	Thale cress	mitochondrion	13.37	20.33
CDY53325	Canola	mitochondrion	24.54	19.2
GSMUA_Achr8P21680_001	Banana	mitochondrion	21.43	18.93
CDY53324	Canola	mitochondrion, plastid	25.27	18.88
Bra001400.1-P	Field mustard	mitochondrion, plastid	25.82	18.83
Bra032865.1-P	Field mustard	cytosol	19.78	18.82
GSMUA_Achr11P...	Banana	mitochondrion	20.51	17.83
CDX73880	Canola	mitochondrion	15.57	16.97
CDY66759	Canola	cytosol	19.6	14.32
Bra032866.1-P	Field mustard	mitochondrion	16.3	13.95

Protein Annotations

EnsemblPlants:GSMUA_Achr5P20750_001	EnsemblPlants:GSMUA_Achr5T20750_001	EnsemblPlantsGene:GSMUA_Achr5G20750_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF644	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
UniParc:UPI000296B97A	UniProt:M0T0A4	MapMan:35.1	:	:	:

Description

Putative Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr5G20750_001]

Coordinates

chr5:-:22629929..22635635

Molecular Weight (calculated)

61979.5 Da

IEP (calculated)

8.788

GRAVY (calculated)

-0.279

Length

546 amino acids

Sequence
(BLAST)

001: MVKLVCRVCN SGAPMLLRQR WFGSQLVAPA SVLKSTEELP PLPKGWHDCL YNRVAASGDP RRSIVPLLER WVQEGRPVDQ SDLREMVKKM RSFRRNFHAL
101: EISTWMSDRR YFCLSPGDVA DRLDLIKKVH GLEQAESFFG NLPKQLKVYQ VHGALLSCYV QDKCVEKAEA FFHRMEEANM LDSFAFNMLM KMYNDIGQLA
201: LVDKIFQEMK NKGFAPDIFT YNILIEAYAT GANVEGVKKV LGSMKHSEIA ASCYTYAIAA KGYVKSGLID EALVLLKESK KLMPRRKGND AYGFLILIYS
301: DIGDKSEMYR VWNMYKSSDK VATSMYMCMM GALLKLDDVE GAEAILKEWE SVTYFHDFRL PNLLLGAYCT RGLLEKAELL VNKAIESGLA PYANAWDRLA
401: SLYFDCGQNL KAVEAMKKAL AEGQAPWKPN PASVMRTLEY MKEQKGVEEA EGIVKLLKRH GPLTQEIYNC LLTIYMRAGK STTDLLEQMA EDGFRADEDT
501: FKILEEKSEK VLPQRTRKKK KNVEQKAIKG TETDRKSAKL AALFSC

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.