Factsheet for GSMUA_Achr10P25000_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P01610_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT5G09450.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT5G09450.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944
AT5G09450.1	GSMUA_AchrUn_...	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0450200-01	Rice	cytosol	41.04	61.99
VIT_11s0078g00180.t01	Wine grape	cytosol	25.4	58.64
EES10908	Sorghum	mitochondrion	53.74	57.11
KRH43872	Soybean	mitochondrion	50.57	56.46
KRH10583	Soybean	mitochondrion	50.11	55.39
TraesCS2A01G318100.1	Wheat	mitochondrion	52.61	55.37
PGSC0003DMT400011461	Potato	mitochondrion	49.43	54.5
Solyc10g047370.1.1	Tomato	mitochondrion	48.98	54.14
TraesCS2B01G336200.1	Wheat	mitochondrion	50.79	53.46
Zm00001d003500_P001	Maize	mitochondrion	51.02	53.19
TraesCS2D01G315700.1	Wheat	mitochondrion	51.93	51.93
HORVU3Hr1G070650.1	Barley	cytosol	17.01	51.72
HORVU2Hr1G079080.2	Barley	cytosol	30.84	49.45
Bra028632.1-P	Field mustard	mitochondrion	45.12	49.26
CDY44801	Canola	mitochondrion	44.67	48.76
AT5G09450.1	Thale cress	mitochondrion	44.67	48.17
HORVU1Hr1G085940.2	Barley	cytosol	17.69	45.88
GSMUA_Achr1P17120_001	Banana	mitochondrion	30.84	26.15
GSMUA_Achr1P16170_001	Banana	cytosol	26.98	24.44
GSMUA_Achr7P12830_001	Banana	mitochondrion	29.71	24.08
GSMUA_AchrUn_...	Banana	cytosol	19.73	23.32
GSMUA_Achr1P02980_001	Banana	mitochondrion	27.21	22.64
GSMUA_Achr5P20750_001	Banana	mitochondrion	26.98	21.79
GSMUA_Achr11P...	Banana	mitochondrion	24.26	20.62
GSMUA_Achr9P23230_001	Banana	mitochondrion	20.18	17.05
GSMUA_Achr5P27560_001	Banana	cytosol	19.27	16.57
GSMUA_Achr11P...	Banana	mitochondrion	21.09	14.81
GSMUA_Achr8P21680_001	Banana	mitochondrion	20.63	14.72

Protein Annotations

EnsemblPlants:GSMUA_Achr10P25000_001	EnsemblPlants:GSMUA_Achr10T25000_001	EnsemblPlantsGene:GSMUA_Achr10G25000_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI00029684BD	UniProt:M0RL74	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:GMGC_GENE;Acc:GSMUA_Achr10G25000_001]

Coordinates

chr10:+:29185420..29187406

Molecular Weight (calculated)

50386.3 Da

IEP (calculated)

9.118

GRAVY (calculated)

-0.405

Length

441 amino acids

Sequence
(BLAST)

001: MRAWKVVRPD PNRAGPDPNR AYKTSRVRSG LRSSNMATGS LFAALVRGSR PRSLRISDLR ASPIAFLESP KSFSSVLPKS DGFSVEEEPA DPEDDLRRRV
101: FRLRLPKRSA TAALDRWVGE GRAVSASELR QIAKDLRRSQ RYKHALEISE WMKTHRESEL SDRDYAMRIE LITKVFGVNA AEDFFEGLPS SAKSCEAYTA
201: LLHSYAAAKL TEKAEKLFER IKELSLSSSA LVYNEMMTLY ISVGQLDKVP PIVEELKRRK VTPDLFTYNL WISSYAAILD INAVRNILDE MAQEPNSDKH
301: WITYMRLADI YLTAGRLVDS DFSLAETDKK ISQQQWITYD FLIILHAGLG NSQMLNEIWK SMRMTSQKMT SRNYICIISS YLVLERSKEA GEVIDEWRKS
401: KAEEFDISDC NRLFEALKKA GLADAAEKFR ELILQKDCVT Y

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.