CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88892
EES06399

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09450.1	EER88892	AT2G44950.1	21798944
AT5G09450.1	EES06399	AT4G32190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0450200-01	Rice	cytosol	60.24	85.62
Zm00001d003500_P001	Maize	mitochondrion	83.86	82.27
HORVU3Hr1G070650.1	Barley	cytosol	27.23	77.93
TraesCS2A01G318100.1	Wheat	mitochondrion	77.83	77.09
TraesCS2B01G336200.1	Wheat	mitochondrion	76.39	75.66
HORVU2Hr1G079080.2	Barley	cytosol	47.71	72.0
TraesCS2D01G315700.1	Wheat	mitochondrion	76.39	71.88
HORVU1Hr1G085940.2	Barley	cytosol	28.19	68.82
GSMUA_Achr10P...	Banana	cytosol	57.11	53.74
VIT_11s0078g00180.t01	Wine grape	cytosol	22.89	49.74
PGSC0003DMT400011461	Potato	mitochondrion	46.99	48.75
KRH43872	Soybean	mitochondrion	46.02	48.35
Solyc10g047370.1.1	Tomato	mitochondrion	46.27	48.12
Bra028632.1-P	Field mustard	mitochondrion	46.75	48.02
CDY44801	Canola	mitochondrion	46.51	47.77
KRH10583	Soybean	mitochondrion	45.78	47.62
AT5G09450.1	Thale cress	mitochondrion	45.78	46.45
EES02848	Sorghum	mitochondrion	28.43	22.26
EES12592	Sorghum	plastid	26.02	20.97
EER91421	Sorghum	mitochondrion	24.34	20.36
EES07683	Sorghum	mitochondrion	25.78	20.3
OQU79216	Sorghum	cytosol	26.51	20.04
EER90330	Sorghum	mitochondrion	23.61	19.52
EER90329	Sorghum	mitochondrion	23.37	19.28
EER87766	Sorghum	cytosol	24.58	19.03
OQU91552	Sorghum	mitochondrion	23.13	18.82
OQU86720	Sorghum	mitochondrion	21.45	14.52
OQU79953	Sorghum	cytosol	20.0	13.28
OQU88705	Sorghum	plastid	19.76	12.87

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8057442	UniProt:C5Y9D8	EnsemblPlants:EES10908	ProteinID:EES10908
ProteinID:EES10908.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13812	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3006G100000	unigene:Sbi.13113	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A86E08	RefSeq:XP_002446580.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr6:+:47060842..47063510

Molecular Weight (calculated)

45938.8 Da

IEP (calculated)

6.421

GRAVY (calculated)

-0.228

Length

415 amino acids

Sequence
(BLAST)

001: MAALLTRAGA RLKRSGSGFH LRSVLAGHGL FSSEAATTAA PAASVDDRAV AVAATGEEDG DDLRSRIFRL GLAKRSATAA LDKWSGEGRA APAAELRRIA
101: RDLSRVRRYK HALEVADWMK THHESDLSES DYGMRIDLIT KVFGASAAED FFEKLPPGAK SLEAYTALLH SYGRSKMTDK AERLFERMKD ANLSMDALVY
201: NEMMTLYISV GELDKVEIIA EELKRQNVSP DLFTYNLRVS AAAASMDLEG FKGILDEMSK DPNSKEGWTL YRNLASVYVD ASQLVGSGNS LVEAEAKISQ
301: REWITYDFLV ILHAGLGNQE RIKDIWKSMV MTSQRMTSRN YICVISSYLM CGQLKDAGEI VDQWQRSKAP EFDISACNRL LDALLSAGLT DTADRFRELM
401: LQKSCILTSR ATVVE

Best Arabidopsis Sequence Match ( AT5G09450.1 )
(BLAST)

001: MATRSLFHSL RCRLTNNGVL GSNFIRNAES SRFSKSYNAD AAIGNSLVEE SEEKDDLKSR IFRLRLPKRS ATTVLEKWIG EGNQMTINEL REISKELRRT
101: RRYKHALEVT EWMVQHEESK ISDADYASRI DLISKVFGID AAERYFEGLD IDSKTAETYT SLLHAYAASK QTERAEALFK RIIESDSLTF GAITYNEMMT
201: LYMSVGQVEK VPEVIEVLKQ KKVSPDIFTY NLWLSSCAAT FNIDELRKIL EEMRHDASSN EGWVRYIDLT SIYINSSRVT NAESTLPVEA EKSISQREWI
301: TYDFLMILHT GLGNKVMIDQ IWKSLRNTNQ ILSSRSYICV LSSYLMLGHL REAEEIIHQW KESKTTEFDA SACLRILNAF RDVGLEGIAS GFHLILVHNK
401: CSLENEGSS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g09450, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q94B59]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.