CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d009122_P001	Maize	mitochondrion	85.47	87.96
Os01t0301000-01	Rice	mitochondrion	73.58	74.71
TraesCS2A01G552700.1	Wheat	mitochondrion	72.26	69.51
TraesCS2B01G584000.2	Wheat	mitochondrion	71.7	68.72
TraesCS2D01G553300.1	Wheat	mitochondrion	72.45	68.57
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	62.26	65.87
Os01t0301500-01	Rice	cytosol, mitochondrion	50.75	55.58
GSMUA_Achr11P...	Banana	mitochondrion	50.75	51.83
VIT_07s0005g01630.t01	Wine grape	mitochondrion	38.11	42.8
PGSC0003DMT400023279	Potato	mitochondrion	38.68	41.41
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	36.23	39.59
KRH31780	Soybean	mitochondrion	34.34	38.24
CDY15237	Canola	mitochondrion	36.98	38.21
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	35.66	37.95
Bra033321.1-P	Field mustard	mitochondrion	36.42	37.48
CDX89976	Canola	mitochondrion	36.23	37.28
AT4G01990.1	Thale cress	mitochondrion	34.91	36.85
CDX91822	Canola	mitochondrion	34.72	36.8
KRH69203	Soybean	cytosol	26.6	36.25
Bra000902.1-P	Field mustard	mitochondrion	34.15	36.13
AT1G02370.1	Thale cress	mitochondrion	36.6	36.13
CDX90962	Canola	mitochondrion	33.96	35.93
Solyc01g100580.2.1	Tomato	mitochondrion	30.0	32.99
PGSC0003DMT400007271	Potato	mitochondrion	29.43	32.3
EER87766	Sorghum	cytosol	31.13	30.78
EES12592	Sorghum	plastid	28.49	29.32
EER90330	Sorghum	mitochondrion	27.74	29.28
EER91421	Sorghum	mitochondrion	27.17	29.03
OQU91552	Sorghum	mitochondrion	27.55	28.63
EES10908	Sorghum	mitochondrion	22.26	28.43
EER90329	Sorghum	mitochondrion	26.6	28.03
OQU79216	Sorghum	cytosol	26.98	26.05
EES07683	Sorghum	mitochondrion	24.91	25.05
OQU86720	Sorghum	mitochondrion	22.26	19.25
OQU88705	Sorghum	plastid	19.62	16.33
OQU79953	Sorghum	cytosol	18.3	15.52

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8060320	UniProt:C5XI57	EnsemblPlants:EES02848	ProteinID:EES02848
ProteinID:EES02848.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3003G144000	SignalP:SignalP-noTM
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A8505D	RefSeq:XP_002457728.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:14449388..14454756

Molecular Weight (calculated)

59641.2 Da

IEP (calculated)

8.921

GRAVY (calculated)

-0.358

Length

530 amino acids

Sequence
(BLAST)

001: MAPPAHSAGA RLLLRRLLST VTEAAAETTA PTAPAAASGV AAPTAAATPS ASAAAAKPAK KDPKLLYRRL SALGIAGEGS VSRVLNKWVR EGGAPRSEEL
101: VKHVKELRKY KRHAHALEVM DWMVNARGMN MSITNHAIRL DLIYKVRGLE AAENYFANLP DPAKNHRTYG ALLSCYCSAK MEEKATYLYR QMDELGFWSG
201: TLPINNLMSL YMKLDQHRKV DSLFEEMKVK NIKPDSLTCC ILMTSYAASN KIDAIEELLK EMVEKDVSLG WSAYSTLASI YVNAGQVEKA ESALKKLEGL
301: IGAEDGRQPF DFLMSLYASL GNLSEINRVW DVIKAKFSTV TNISYLGMLH ALYKLNDIDR MKQIYMEWES NYQTYDVRLT NMMIRGHLRL GMSEEAETLR
401: EKAKEKGVEF DSKTCELFLD HYMGKGDMNS ALNWVENMTK LPKKAGKLDQ DRIYKFQKYF EEHKDADSAE RFCNCLRMLG CIDGKAYESL LRTYLAAGKK
501: SCSLRQQIKN DKIEICYDIG KLLKRLGDER

Best Arabidopsis Sequence Match ( AT1G02370.1 )
(BLAST)

001: MNFRNLIASG SRLGKRFCAT VFAPASATGI VEASVSSPAA ANVVEASVSS PAAENGVRTS VAAPTVASRQ RELYKKLSML SVTGGTVAET LNQFIMEGIT
101: VRKDDLFRCA KTLRKFRRPQ HAFEIFDWME KRKMTFSVSD HAICLDLIGK TKGLEAAENY FNNLDPSAKN HQSTYGALMN CYCVELEEEK AKAHFEIMDE
201: LNFVNNSLPF NNMMSMYMRL SQPEKVPVLV DAMKQRGISP CGVTYSIWMQ SCGSLNDLDG LEKIIDEMGK DSEAKTTWNT FSNLAAIYTK AGLYEKADSA
301: LKSMEEKMNP NNRDSHHFLM SLYAGISKGP EVYRVWESLK KARPEVNNLS YLVMLQAMSK LGDLDGIKKI FTEWESKCWA YDMRLANIAI NTYLKGNMYE
401: EAEKILDGAM KKSKGPFSKA RQLLMIHLLE NDKADLAMKH LEAAVSDSAE NKDEWGWSSE LVSLFFLHFE KAKDVDGAED FCKILSNWKP LDSETMTFLI
501: KTYAAAEKTS PDMRERLSQQ QIEVSEEIQD LLKTVCP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g02370, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ24]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.