Factsheet for Zm00001d009122_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 4

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES02848	Sorghum	mitochondrion	87.96	85.47
Os01t0301000-01	Rice	mitochondrion	74.56	73.56
TraesCS2A01G552700.1	Wheat	mitochondrion	74.76	69.87
TraesCS2B01G584000.2	Wheat	mitochondrion	73.98	68.9
TraesCS2D01G553300.1	Wheat	mitochondrion	74.76	68.75
HORVU2Hr1G120330.4	Barley	endoplasmic reticulum, extracellular	64.08	65.87
Os01t0301500-01	Rice	cytosol, mitochondrion	51.65	54.96
GSMUA_Achr11P...	Banana	mitochondrion	52.23	51.83
VIT_07s0005g01630.t01	Wine grape	mitochondrion	38.84	42.37
PGSC0003DMT400023279	Potato	mitochondrion	38.25	39.8
Solyc01g079320.2.1	Tomato	cytosol, mitochondrion	35.34	37.53
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	36.12	37.35
CDY15237	Canola	mitochondrion	36.89	37.04
CDX91822	Canola	mitochondrion	35.92	37.0
KRH31780	Soybean	mitochondrion	34.17	36.97
AT4G01990.1	Thale cress	mitochondrion	35.92	36.85
Bra000902.1-P	Field mustard	mitochondrion	35.34	36.33
Bra033321.1-P	Field mustard	mitochondrion	36.31	36.31
KRH69203	Soybean	cytosol	27.38	36.25
CDX90962	Canola	mitochondrion	35.15	36.13
CDX89976	Canola	mitochondrion	36.12	36.12
AT1G02370.1	Thale cress	mitochondrion	37.09	35.57
Solyc01g100580.2.1	Tomato	mitochondrion	31.65	33.82
PGSC0003DMT400007271	Potato	mitochondrion	30.68	32.71
Zm00001d002789_P001	Maize	plastid	29.32	29.43
Zm00001d023915_P001	Maize	mitochondrion	27.38	28.14
Zm00001d032543_P001	Maize	mitochondrion	28.16	28.05
Zm00001d045492_P004	Maize	cytosol	32.23	27.85
Zm00001d013923_P001	Maize	mitochondrion	26.21	27.0
Zm00001d003500_P001	Maize	mitochondrion	20.19	24.59
Zm00001d052030_P001	Maize	plastid	24.47	24.0
Zm00001d011182_P001	Maize	endoplasmic reticulum	19.81	20.73
Zm00001d040475_P001	Maize	mitochondrion	23.69	19.9
Zm00001d024521_P001	Maize	mitochondrion	19.22	19.26
Zm00001d008224_P002	Maize	mitochondrion	23.11	19.13
Zm00001d019185_P001	Maize	cytosol	20.19	10.03

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103635083	MapMan:35.1	ProteinID:AQK91350.1	EMBL:BT065724	UniProt:C0PBQ5
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF504	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000194B274	EnsemblPlantsGene:Zm00001d009122	EnsemblPlants:Zm00001d009122_P001	EnsemblPlants:Zm00001d009122_T001
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein mitochondrial

Coordinates

chr8:+:37713430..37720026

Molecular Weight (calculated)

58534.8 Da

IEP (calculated)

8.823

GRAVY (calculated)

-0.416

Length

515 amino acids

Sequence
(BLAST)

001: MAPPAPSVGP RLLLRRLLST ATEAAAETPA PTAPSSAAAA KPAKQDPRLL YRRLSALGSA GEGSVSRVLN KWVREGGATR SDDLVKHVKE LRKYKRHAHA
101: LELMDWMVNA RGMNMSHTNH AIRLELIYKV RGLEAAENYF ANLPDPAKNH RTYGSLLSCY CSAKMEEKAT NLYRQMDELG IWSSTLPINN LMSLYMKLDQ
201: YRKVVSLFEE MKLKNVKPNS LTCCILMTSY AALNKIDDIE ELLKEMVEKD VTLGWSAYST LASIYVNAGQ FGKAESALKK LEGLISAHDD RQPFDFLLSL
301: YASLGNLSEV NRVWNVIKSK FSKVTNTSYL GMLHALYKLN DIDRMKQIYM EWESNYETFD VKLTNMMIRS HLKVGMTEEA EMLVEKVKEN GAEFDTKTCE
401: LFLDHYMGTE DMNSALNWLE NMTKLSKKAE KLDQDRIYKF QKYFEEHKDA DGAERFCNCL RTLGCIDGKA YESLLRTYLA AGKKSCSLRQ QIKNDKVEIC
501: YDIGKLLKRL GDKGR

Best Arabidopsis Sequence Match ( AT4G01990.1 )
(BLAST)

001: MMHSVSRLAR RFCATLATAT AEISGEAAAS VPTKAKKHRS IYKKLSSLGT RGGGKMEETL NQFVMEGVPV KKHDLIRYAK DLRKFRQPQR ALEIFEWMER
101: KEIAFTGSDH AIRLNLIAKS KGLEAAETYF NSLDDSIKNQ STYGSLLNCY CVEKEEVKAK AHFENMVDLN HVSNSLPFNN LMAMYMGLGQ PEKVPALVVA
201: MKEKSITPCD ITYSMWIQSC GSLKDLDGVE KVLDEMKAEG EGIFSWNTFA NLAAIYIKVG LYGKAEEALK SLENNMNPDV RDCYHFLINL YTGIANASEV
301: YRVWDLLKKR YPNVNNSSYL TMLRALSKLD DIDGVKKVFA EWESTCWTYD MRMANVAISS YLKQNMYEEA EAVFNGAMKK CKGQFSKARQ LLMMHLLKND
401: QADLALKHFE AAVLDQDKNW TWSSELISSF FLHFEEAKDV DGAEEFCKTL TKWSPLSSET YTLLMKTYLA AGKACPDMKK RLEEQGILVD EEQECLLSKI
501: CP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At4g01990, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q93WC5]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.