Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 2
- endoplasmic reticulum 4
- extracellular 2
- vacuole 2
- plasma membrane 2
- golgi 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d052030_P001 | Maize | plastid | 68.09 | 63.81 |
| EES07683 | Sorghum | mitochondrion | 63.21 | 59.01 |
| Os02t0796400-00 | Rice | mitochondrion | 54.06 | 51.45 |
| TraesCS6D01G341400.1 | Wheat | mitochondrion | 53.66 | 50.77 |
| TraesCS6A01G358600.1 | Wheat | mitochondrion | 52.64 | 50.1 |
| TraesCS6B01G391300.1 | Wheat | mitochondrion | 52.03 | 49.61 |
| HORVU6Hr1G085430.2 | Barley | mitochondrion | 53.05 | 49.34 |
| GSMUA_Achr7P12830_001 | Banana | mitochondrion | 41.46 | 37.5 |
| VIT_18s0001g07000.t01 | Wine grape | mitochondrion | 36.79 | 36.06 |
| PGSC0003DMT400004477 | Potato | plastid | 33.33 | 34.1 |
| KRH52991 | Soybean | mitochondrion | 34.15 | 33.87 |
| Bra036629.1-P | Field mustard | mitochondrion | 31.1 | 32.08 |
| CDY19721 | Canola | mitochondrion | 30.89 | 31.87 |
| CDX99984 | Canola | mitochondrion | 30.69 | 31.59 |
| AT5G27460.1 | Thale cress | cytosol, mitochondrion, plastid | 31.5 | 31.57 |
| Solyc01g081320.2.1 | Tomato | plastid | 32.52 | 30.89 |
| CDY25035 | Canola | mitochondrion, plastid | 30.28 | 30.41 |
| Bra020588.1-P | Field mustard | mitochondrion | 30.28 | 30.35 |
| KRH62276 | Soybean | mitochondrion | 34.35 | 29.39 |
| CDY05574 | Canola | mitochondrion | 29.88 | 28.05 |
| Zm00001d023915_P001 | Maize | mitochondrion | 24.59 | 24.15 |
| Zm00001d013923_P001 | Maize | mitochondrion | 21.75 | 21.4 |
| Zm00001d002789_P001 | Maize | plastid | 21.95 | 21.05 |
| Zm00001d032543_P001 | Maize | mitochondrion | 21.54 | 20.5 |
| Zm00001d003500_P001 | Maize | mitochondrion | 17.48 | 20.33 |
| Zm00001d009122_P001 | Maize | mitochondrion | 20.73 | 19.81 |
| Zm00001d045492_P004 | Maize | cytosol | 20.33 | 16.78 |
| Zm00001d024521_P001 | Maize | mitochondrion | 15.24 | 14.59 |
| Zm00001d040475_P001 | Maize | mitochondrion | 16.67 | 13.38 |
| Zm00001d008224_P002 | Maize | mitochondrion | 16.26 | 12.86 |
| Zm00001d019185_P001 | Maize | cytosol | 14.84 | 7.04 |
Protein Annotations
| EnsemblPlants:Zm00001d011182_P001 | EnsemblPlants:Zm00001d011182_T001 | EnsemblPlantsGene:Zm00001d011182 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF578 | PFAM:PF01535 | PFscan:PS51375 | ProteinID:AQK96116.1 | TIGRFAMs:TIGR00756 | UniParc:UPI0008453F42 |
| UniProt:A0A1D6FXP1 | MapMan:5.4.11 | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein
Coordinates
chr8:-:142209717..142212537
Molecular Weight (calculated)
56123.6 Da
IEP (calculated)
8.240
GRAVY (calculated)
-0.203
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MIYLVLALGW EAASIFRKGV IKNMRRNIVD GNSFAFLCDN IDELEHSVQE NLPRVSVVMP LKGFGKHNLQ NWRTQITSLY GGPLEFLFIV ESKYDPAYHV
101: VSRLITEYKD NLEAKVVVAG LSTTCSQKIH NQLTWHFNGR VAYSLTNNNI LHIHYRADVP SFHTKFSERR YEQALEIFSW MESCSSLRLS SWDHAARLDL
201: IAKAYSTSQA EEYYNKLQSP ATRQAASFPL LHCYVMERDV QKAETFMAQL QSHGLPVDPH SFNEIMNLYV ATLFQVMLND ETVKVGWSTY CTLANIFRKN
301: GLNTEAQACL VKAEAKLSPT GRLGYSFVMT CYAALNDSDG VMRMWEASKS VPGRILTAYY MAAMSCSIKV GDISQAECIF GKWEAGCRKH DVRVSNVLLG
401: AYVRNRWIEK AERLHLHMLE KGACPNYKTW EILMEGYVQS RQMDKAVGCM KKGLSLLKSC HWRPPVELME AIGKHFEEQG SADDAYRYIK VL
101: VSRLITEYKD NLEAKVVVAG LSTTCSQKIH NQLTWHFNGR VAYSLTNNNI LHIHYRADVP SFHTKFSERR YEQALEIFSW MESCSSLRLS SWDHAARLDL
201: IAKAYSTSQA EEYYNKLQSP ATRQAASFPL LHCYVMERDV QKAETFMAQL QSHGLPVDPH SFNEIMNLYV ATLFQVMLND ETVKVGWSTY CTLANIFRKN
301: GLNTEAQACL VKAEAKLSPT GRLGYSFVMT CYAALNDSDG VMRMWEASKS VPGRILTAYY MAAMSCSIKV GDISQAECIF GKWEAGCRKH DVRVSNVLLG
401: AYVRNRWIEK AERLHLHMLE KGACPNYKTW EILMEGYVQS RQMDKAVGCM KKGLSLLKSC HWRPPVELME AIGKHFEEQG SADDAYRYIK VL
001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.