CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052030_P001	Maize	plastid	88.8	89.14
Os02t0796400-00	Rice	mitochondrion	74.76	76.21
TraesCS6D01G341400.1	Wheat	mitochondrion	72.87	73.85
TraesCS6A01G358600.1	Wheat	mitochondrion	72.11	73.5
TraesCS6B01G391300.1	Wheat	mitochondrion	71.73	73.26
HORVU6Hr1G085430.2	Barley	mitochondrion	72.11	71.83
Zm00001d011182_P001	Maize	endoplasmic reticulum	59.01	63.21
GSMUA_Achr7P12830_001	Banana	mitochondrion	51.8	50.18
VIT_18s0001g07000.t01	Wine grape	mitochondrion	44.78	47.01
KRH52991	Soybean	mitochondrion	43.26	45.97
CDY19721	Canola	mitochondrion	40.99	45.28
Bra036629.1-P	Field mustard	mitochondrion	40.99	45.28
CDX99984	Canola	mitochondrion	40.99	45.19
CDY25035	Canola	mitochondrion, plastid	40.99	44.08
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	40.42	43.38
Bra020588.1-P	Field mustard	mitochondrion	40.04	42.97
PGSC0003DMT400004477	Potato	plastid	38.9	42.62
Solyc01g081320.2.1	Tomato	plastid	40.61	41.31
KRH62276	Soybean	mitochondrion	44.4	40.7
CDY05574	Canola	mitochondrion	40.04	40.27
EER90330	Sorghum	mitochondrion	25.62	26.89
OQU79216	Sorghum	cytosol	27.32	26.23
EER91421	Sorghum	mitochondrion	24.67	26.21
EER90329	Sorghum	mitochondrion	24.86	26.04
EES12592	Sorghum	plastid	25.24	25.83
EES10908	Sorghum	mitochondrion	20.3	25.78
EES02848	Sorghum	mitochondrion	25.05	24.91
OQU91552	Sorghum	mitochondrion	23.91	24.71
EER87766	Sorghum	cytosol	24.67	24.25
OQU86720	Sorghum	mitochondrion	20.87	17.94
OQU79953	Sorghum	cytosol	19.92	16.8
OQU88705	Sorghum	plastid	19.17	15.86

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8056388	UniProt:C5XUH0	EnsemblPlants:EES07683	ProteinID:EES07683
ProteinID:EES07683.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G330800	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A862AC	RefSeq:XP_002454707.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr4:-:66407954..66410833

Molecular Weight (calculated)

59489.1 Da

IEP (calculated)

9.243

GRAVY (calculated)

-0.183

Length

527 amino acids

Sequence
(BLAST)

001: MAAAARSRLA VLRRLDLASR TPSNPKPLLL SSAFSSSTLS APLAAGRVRE DESSLLSRHL LRLHLRSPRG AAAAAIDRWA RESVHISQPE LRRAIAMLRR
101: ARRYEHALEI FSWMESCNSV LLSSWDHAAR LDLIAKAYGT SQAEEYYNKL QSPAARQAAS FPLLHCYVTE RNVQKAETFM AQLQSCGLPV DPHSFNEIMK
201: LYIATFQYEK ALSVIDLMKR NNIPRNVLSY NLWMNVCAEV SGVAPVQSVF QEMLNDETVE VGWSTYCTLA NIFRKNGLNT KAQACLRKAE TKLSPTGRLG
301: YSFVMTCYAA LNDSDGVMRL WEASKSVPGR IPAANYMTAM LCSIKVGDIS QAEWIFGSWE AGCRKHDVRV SNVLLGAYVR NRWIEKAERL HLHMLEKGAR
401: PNYKTWEILM EGYVQSRQMD KAVGCMKKGL SLLKSCHWRP PLELMEAIGK HFEEQGSADD AYRYIKVLQR FNLTSLPLYK SLIRAYINAD IVPPNILEMI
501: AKDQIVTDEE MDRLIILASK IDITCNG

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.