Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 7
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G341400.1 | Wheat | mitochondrion | 96.91 | 96.35 |
TraesCS6B01G391300.1 | Wheat | mitochondrion | 94.78 | 94.96 |
HORVU6Hr1G085430.2 | Barley | mitochondrion | 94.2 | 92.06 |
Os02t0796400-00 | Rice | mitochondrion | 74.27 | 74.27 |
EES07683 | Sorghum | mitochondrion | 73.5 | 72.11 |
Zm00001d052030_P001 | Maize | plastid | 70.6 | 69.52 |
Zm00001d011182_P001 | Maize | endoplasmic reticulum | 50.1 | 52.64 |
GSMUA_Achr7P12830_001 | Banana | mitochondrion | 52.42 | 49.82 |
VIT_18s0001g07000.t01 | Wine grape | mitochondrion | 47.0 | 48.41 |
KRH52991 | Soybean | mitochondrion | 43.91 | 45.77 |
CDY25035 | Canola | mitochondrion, plastid | 42.36 | 44.69 |
CDY19721 | Canola | mitochondrion | 41.2 | 44.65 |
Bra036629.1-P | Field mustard | mitochondrion | 41.01 | 44.44 |
CDX99984 | Canola | mitochondrion | 41.01 | 44.35 |
Bra020588.1-P | Field mustard | mitochondrion | 41.97 | 44.2 |
AT5G27460.1 | Thale cress | cytosol, mitochondrion, plastid | 41.59 | 43.79 |
PGSC0003DMT400004477 | Potato | plastid | 40.23 | 43.24 |
CDY05574 | Canola | mitochondrion | 42.55 | 41.98 |
Solyc01g081320.2.1 | Tomato | plastid | 41.97 | 41.89 |
KRH62276 | Soybean | mitochondrion | 44.29 | 39.83 |
TraesCS5A01G099700.1 | Wheat | mitochondrion | 30.95 | 31.37 |
TraesCS2A01G391600.1 | Wheat | plastid | 25.92 | 26.64 |
TraesCS2A01G318100.1 | Wheat | mitochondrion | 21.28 | 26.25 |
TraesCS1A01G168800.1 | Wheat | mitochondrion | 25.92 | 26.22 |
TraesCS7A01G061300.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 25.92 | 24.95 |
TraesCS4A01G428500.1 | Wheat | mitochondrion | 25.92 | 24.86 |
TraesCS1A01G168700.1 | Wheat | mitochondrion | 27.66 | 24.49 |
TraesCS2A01G552700.1 | Wheat | mitochondrion | 25.73 | 24.14 |
TraesCS6A01G091100.1 | Wheat | mitochondrion | 23.6 | 24.06 |
TraesCS6A01G090900.1 | Wheat | mitochondrion | 22.05 | 23.8 |
TraesCS6A01G091200.2 | Wheat | cytosol | 16.63 | 23.56 |
TraesCS6A01G091000.1 | Wheat | mitochondrion | 23.02 | 23.33 |
TraesCS6A01G090800.2 | Wheat | mitochondrion | 21.28 | 22.82 |
TraesCS2A01G552100.1 | Wheat | mitochondrion | 23.4 | 22.0 |
TraesCS7A01G296400.1 | Wheat | mitochondrion | 20.5 | 20.66 |
TraesCS3A01G191200.1 | Wheat | mitochondrion | 23.6 | 19.93 |
Protein Annotations
EnsemblPlants:TraesCS6A01G358600.1 | EnsemblPlantsGene:TraesCS6A01G358600 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF578 |
PFAM:PF01535 | PFAM:PF13812 | PFscan:PS51375 | SEG:seg | SUPFAM:SSF48452 | TIGRFAMs:TIGR00756 |
MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:588566549..588568590
Molecular Weight (calculated)
58092.1 Da
IEP (calculated)
8.922
GRAVY (calculated)
-0.196
Length
517 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAAAVARR LLRLLSSRSN PKPASLSSCS SSSSFDTPAT AGEREGDPLS WRLLRLRSPG AAAAAIDGWA QERGRVWRPD LQRAVSQLRR ARRYGHALEI
101: LSWMDSRKEI KLLPLDHAAR LDLIAKVHGT SQAEEYYNKL TNSASREAAS FPLLHCYVAD RNVQKAESFM ASLQSIGLPV DPHSFNEMMK LYVATCQYEK
201: VFSVIDLMKR NNIPRNALSY NLWMNACSVS DVSSVQSVFK EMDNDGTIEV GWSTYCTLAN IFKKHGLNSK ALACLRTAET TLSTTQRLGY SFVMTCYAAL
301: GDNDGVMRLW EASKCVPGRI PAANYMTAIL CLIKVGDIDR AEWIFGSWEA VCRKHDVRVS NVLLGAYVRN GWIEKAEKLH LHMLEKGARP NYNTWEILME
401: GFVQSRQMDK AVNAMKKALS LMKSCHWRPP LKLVEAIAAF FEEQGNTDDA SRYIKLLQKF NLTSLPLYKS VLQAYIKADT VVPTNISEMI ARDDIVMDEE
501: MDHLIIRASK IDIRGDV
101: LSWMDSRKEI KLLPLDHAAR LDLIAKVHGT SQAEEYYNKL TNSASREAAS FPLLHCYVAD RNVQKAESFM ASLQSIGLPV DPHSFNEMMK LYVATCQYEK
201: VFSVIDLMKR NNIPRNALSY NLWMNACSVS DVSSVQSVFK EMDNDGTIEV GWSTYCTLAN IFKKHGLNSK ALACLRTAET TLSTTQRLGY SFVMTCYAAL
301: GDNDGVMRLW EASKCVPGRI PAANYMTAIL CLIKVGDIDR AEWIFGSWEA VCRKHDVRVS NVLLGAYVRN GWIEKAEKLH LHMLEKGARP NYNTWEILME
401: GFVQSRQMDK AVNAMKKALS LMKSCHWRPP LKLVEAIAAF FEEQGNTDDA SRYIKLLQKF NLTSLPLYKS VLQAYIKADT VVPTNISEMI ARDDIVMDEE
501: MDHLIIRASK IDIRGDV
001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]
SUBAcon: [mitochondrion,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.