Factsheet for TraesCS6B01G391300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G358600.1	Wheat	mitochondrion	94.96	94.78
TraesCS6D01G341400.1	Wheat	mitochondrion	94.96	94.23
HORVU6Hr1G085430.2	Barley	mitochondrion	93.99	91.68
Os02t0796400-00	Rice	mitochondrion	74.61	74.47
EES07683	Sorghum	mitochondrion	73.26	71.73
Zm00001d052030_P001	Maize	plastid	70.16	68.95
Zm00001d011182_P001	Maize	endoplasmic reticulum	49.61	52.03
GSMUA_Achr7P12830_001	Banana	mitochondrion	53.1	50.37
VIT_18s0001g07000.t01	Wine grape	mitochondrion	48.45	49.8
KRH52991	Soybean	mitochondrion	44.77	46.57
CDY25035	Canola	mitochondrion, plastid	43.8	46.12
Bra036629.1-P	Field mustard	mitochondrion	42.05	45.49
CDX99984	Canola	mitochondrion	42.05	45.4
CDY19721	Canola	mitochondrion	41.86	45.28
Bra020588.1-P	Field mustard	mitochondrion	42.64	44.81
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	42.44	44.6
PGSC0003DMT400004477	Potato	plastid	40.31	43.24
CDY05574	Canola	mitochondrion	43.22	42.56
Solyc01g081320.2.1	Tomato	plastid	42.05	41.89
KRH62276	Soybean	mitochondrion	45.54	40.87
TraesCS5B01G104900.1	Wheat	mitochondrion	31.78	32.16
TraesCS1B01G188200.1	Wheat	mitochondrion	28.29	29.67
TraesCS1B01G188100.1	Wheat	mitochondrion	26.36	26.61
TraesCS2B01G410100.1	Wheat	plastid	25.78	26.18
TraesCS2B01G336200.1	Wheat	mitochondrion	20.93	25.78
TraesCS2B01G584000.2	Wheat	mitochondrion	26.74	24.95
TraesCS6B01G119100.1	Wheat	mitochondrion	23.84	24.85
TraesCS2B01G583500.1	Wheat	mitochondrion	23.06	24.79
TraesCS6B01G118900.1	Wheat	cytosol	19.77	24.52
TraesCS6B01G119000.1	Wheat	mitochondrion	22.09	23.8
TraesCS7B01G189100.1	Wheat	mitochondrion	20.54	20.66
TraesCS3B01G220600.2	Wheat	mitochondrion	23.45	19.74

Protein Annotations

EnsemblPlants:TraesCS6B01G391300.1	EnsemblPlantsGene:TraesCS6B01G391300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF578
PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr6B:+:665524068..665526106

Molecular Weight (calculated)

57936.5 Da

IEP (calculated)

9.358

GRAVY (calculated)

-0.169

Length

516 amino acids

Sequence
(BLAST)

001: MAMAAAVARR LLRLLSSRSN PKPASLSSCP SSSFGTPATA GEREGDPLSW RLLRLRSPGA AAAAIDGWAQ ERARVSRPDL QRAVSQLRRA RRYGHALEIL
101: SWMDSRKEIK LLPLDHAARL DLIAKVHGTS QAEEYYKKLP NSALREAASF PLLHCYVADR NVQKAESFMA SLQSIGLPVD PHSFNEMMKL YVATCQYEKV
201: CSVIDLMKRN NIPRNALSYN IWMNACSVSG VASVESVYKE MVNDGMIEVG WSTYCTLANI FKKHGLNSKA LACLRTAETK LSTTQRLGYS FVMTCYAALG
301: DSDGVMRLWE ASKCVPGRIP AANYMTAILC LIKVGDIDRA EWIFGSWEAE CRKHDVRVSN VLLGAYVRSG WIEKAEKLHL HMLQKGARPN YKTWEILMEG
401: FVQTRQMDKA VNAMKKALSL MKCCHWRPPL KLVEAIAAFF EEQGNTDDAN RYIKLLQKFN LTSLPLYKSV LRAYIKADTV LPTNISEMIA RDDIVMDEEM
501: DHLIIRASKI DIRGDV

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.