CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY19721	Canola	mitochondrion	90.8	90.99
CDY25035	Canola	mitochondrion, plastid	79.71	77.76
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	75.52	73.52
CDY05574	Canola	mitochondrion	79.29	72.33
VIT_18s0001g07000.t01	Wine grape	mitochondrion	54.81	52.19
KRH52991	Soybean	mitochondrion	53.56	51.61
PGSC0003DMT400004477	Potato	plastid	48.54	48.23
Solyc01g081320.2.1	Tomato	plastid	48.12	44.4
KRH62276	Soybean	mitochondrion	52.72	43.83
TraesCS6B01G391300.1	Wheat	mitochondrion	45.4	42.05
GSMUA_Achr7P12830_001	Banana	mitochondrion	47.7	41.91
TraesCS6D01G341400.1	Wheat	mitochondrion	44.98	41.35
HORVU6Hr1G085430.2	Barley	mitochondrion	45.4	41.02
TraesCS6A01G358600.1	Wheat	mitochondrion	44.35	41.01
Os02t0796400-00	Rice	mitochondrion	44.35	41.01
EES07683	Sorghum	mitochondrion	45.19	40.99
Zm00001d052030_P001	Maize	plastid	44.14	40.19
Zm00001d011182_P001	Maize	endoplasmic reticulum	31.59	30.69
CDY24553	Canola	mitochondrion	17.15	28.47
CDX96239	Canola	mitochondrion	28.87	28.11
CDY46999	Canola	mitochondrion	28.87	28.11
CDY15126	Canola	cytosol, mitochondrion, plastid	29.71	27.73
CDX90079	Canola	mitochondrion	29.5	27.54
CDY34141	Canola	mitochondrion	28.24	27.44
CDX97288	Canola	mitochondrion	29.29	27.24
CDY50358	Canola	cytosol	13.39	27.23
CDX91277	Canola	mitochondrion	29.5	27.17
CDY35213	Canola	cytosol	2.3	26.83
CDX98698	Canola	mitochondrion	27.2	26.64
CDY39781	Canola	mitochondrion	26.57	26.57
CDY03299	Canola	mitochondrion	26.15	26.43
CDX89976	Canola	mitochondrion	28.24	26.21
CDY15237	Canola	mitochondrion	28.03	26.12
CDY50357	Canola	mitochondrion	10.88	26.0
CDY44801	Canola	mitochondrion	21.97	25.99
CDX91822	Canola	mitochondrion	26.78	25.6
CDY65573	Canola	mitochondrion	19.67	25.41
CDX90962	Canola	mitochondrion	26.57	25.35
CDY35212	Canola	mitochondrion	14.02	23.84
CDY24554	Canola	cytosol	7.11	22.22
CDY27645	Canola	mitochondrion	11.72	21.62
CDY71968	Canola	plastid	12.76	20.89
CDY05786	Canola	plastid	20.29	20.0
CDY31943	Canola	plastid	20.08	19.79
CDY00734	Canola	mitochondrion	7.32	19.77
CDY06272	Canola	mitochondrion	21.34	19.25
CDY57695	Canola	mitochondrion	24.27	19.24
CDY09903	Canola	mitochondrion	21.13	19.06
CDY39654	Canola	mitochondrion	23.64	18.8
CDY36566	Canola	mitochondrion	23.22	18.47
CDX94049	Canola	cytosol	26.99	18.38
CDY27647	Canola	mitochondrion	15.48	18.18
CDY48421	Canola	mitochondrion	14.85	17.19
CDX97686	Canola	plastid	21.97	16.94
CDY30088	Canola	plastid	21.76	16.86
CDY53325	Canola	mitochondrion	20.71	14.18
CDY53324	Canola	mitochondrion, plastid	20.5	13.41
CDX73880	Canola	mitochondrion	12.76	12.18
CDY66759	Canola	cytosol	18.2	11.65
CDX79395	Canola	cytosol	23.64	11.02
CDY36565	Canola	cytosol	1.26	1.79

Protein Annotations

EnsemblPlants:CDX99984	EnsemblPlantsGene:GSBRNA2T00109452001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil	PANTHER:PTHR24015
PANTHER:PTHR24015:SF578	PFAM:PF01535	PFAM:PF13812	PFscan:PS51375	ProteinID:CDX99984	ProteinID:CDX99984.1
SEG:seg	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EE09B0	MapMan:35.1	:

Description

BnaC09g03170D

Coordinates

chrLK031916:+:84025..85537

Molecular Weight (calculated)

54835.8 Da

IEP (calculated)

8.823

GRAVY (calculated)

-0.218

Length

478 amino acids

Sequence
(BLAST)

001: MYSRIRLAAK TSFLARLLSS SASTDTLKKI LRKSDVPSLL QQRVDSGHPV TLSELRFISK RLIRSNRHDL ALQMMEWMET RKDVNFSAYD TALKLELIIK
101: ARGFKEAEEY FEQLQSSVSA ARSAYLPLLR GYVKGRLVQE AESLMEKLNV LGFLVTPHPF NEMMKLYEAT HQYEKVVMVI GLMKRNKIPR NVLSYNLWMN
201: ACCEASGVGD VESVYGEMVG DKSVEVGWSS LCTLGNVYVK AGFVEKAKLV LESAEKKLNR SNRLGYFFLI TMYASLGNKE GVVRLWEGSK SVSGRMTCAN
301: YICVLSSLVR LGDLTEAERV FEEWEEKCCN YDVRVSNVLL GAYTRNGLIR EAESLHNRVL ERGGSPNYKT WEILMEGWVK CQSMEKAIDA MHRAFELMKG
401: CHWRPSQRIV MAIAEYFEKE EMIEEANIYV RELHRLGLAS LTLYRLLLRM HEHVQRPASH IYDMMKSDNI QMAEGSLR

Best Arabidopsis Sequence Match ( AT5G27460.1 )
(BLAST)

001: MLIRCVAVAK TRFNTTGVVS RLVSSLADGS DTSSVANRNS LKEILRKNGP RRSVTSLLQE RIDSGHAVSL SELRLISKRL IRSNRYDLAL QMMEWMENQK
101: DIEFSVYDIA LRLDLIIKTH GLKQGEEYFE KLLHSSVSMR VAKSAYLPLL RAYVKNKMVK EAEALMEKLN GLGFLVTPHP FNEMMKLYEA SGQYEKVVMV
201: VSMMKGNKIP RNVLSYNLWM NACCEVSGVA AVETVYKEMV GDKSVEVGWS SLCTLANVYI KSGFDEKARL VLEDAEKMLN RSNRLGYFFL ITLYASLGNK
301: EGVVRLWEVS KSVCGRISCV NYICVLSSLV KTGDLEEAER VFSEWEAQCF NYDVRVSNVL LGAYVRNGEI RKAESLHGCV LERGGTPNYK TWEILMEGWV
401: KCENMEKAID AMHQVFVLMR RCHWRPSHNI VMAIAEYFEK EEKIEEATAY VRDLHRLGLA SLPLYRLLLR MHEHAKRPAY DIYEMMKLDK L

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g27460 [Source:UniProtKB/Swiss-Prot;Acc:Q3E911]
SUBAcon: [mitochondrion,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.