CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39781	Canola	mitochondrion	95.77	94.77
AT2G20710.1	Thale cress	mitochondrion	82.45	79.59
CDY35213	Canola	cytosol	3.59	41.46
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	40.59	38.48
CDY65573	Canola	mitochondrion	29.6	37.84
CDY35212	Canola	mitochondrion	21.99	37.01
PGSC0003DMT400047256	Potato	extracellular	24.95	36.53
Solyc07g054100.1.1	Tomato	cytosol	24.74	36.22
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	38.05	36.14
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	37.21	35.7
KRH22399	Soybean	cytosol	35.52	35.29
KRH26940	Soybean	cytosol	35.73	34.07
CDY00734	Canola	mitochondrion	12.05	32.2
CDY71968	Canola	plastid	19.87	32.19
CDY27645	Canola	mitochondrion	17.34	31.66
CDY31943	Canola	plastid	31.92	31.13
TraesCS1B01G188200.1	Wheat	mitochondrion	32.35	31.1
Os10t0501300-01	Rice	mitochondrion	33.62	30.99
CDY05786	Canola	plastid	31.71	30.93
GSMUA_Achr5P20750_001	Banana	mitochondrion	35.52	30.77
TraesCS1D01G166700.1	Wheat	mitochondrion	31.71	30.3
OQU91552	Sorghum	mitochondrion	31.92	29.61
CDY24553	Canola	mitochondrion	17.55	28.82
CDX97288	Canola	mitochondrion	30.87	28.4
Os10t0501000-01	Rice	cytosol	27.06	28.38
CDX91277	Canola	mitochondrion	31.08	28.32
CDX98698	Canola	mitochondrion	29.18	28.28
CDY27647	Canola	mitochondrion	24.1	28.01
CDY48421	Canola	mitochondrion	23.89	27.36
Zm00001d032543_P001	Maize	mitochondrion	29.81	27.27
CDY15126	Canola	cytosol, mitochondrion, plastid	29.39	27.15
CDX90079	Canola	mitochondrion	28.96	26.76
CDY50357	Canola	mitochondrion	11.21	26.5
CDX99984	Canola	mitochondrion	26.43	26.15
TraesCS1A01G168700.1	Wheat	mitochondrion	31.92	25.86
CDY25035	Canola	mitochondrion, plastid	26.43	25.51
CDY19721	Canola	mitochondrion	25.58	25.37
Os10t0501200-00	Rice	mitochondrion	32.77	24.76
CDY15237	Canola	mitochondrion	26.85	24.76
CDX89976	Canola	mitochondrion	26.64	24.47
CDX96239	Canola	mitochondrion	25.37	24.44
CDY44801	Canola	mitochondrion	20.72	24.26
CDY46999	Canola	mitochondrion	25.16	24.24
CDY34141	Canola	mitochondrion	24.95	23.98
CDY05574	Canola	mitochondrion	26.43	23.86
CDX91822	Canola	mitochondrion	24.52	23.2
CDX90962	Canola	mitochondrion	23.89	22.55
CDY50358	Canola	cytosol	9.94	20.0
CDY53325	Canola	mitochondrion	29.18	19.77
CDY36566	Canola	mitochondrion	24.95	19.63
CDY39654	Canola	mitochondrion	24.74	19.47
CDY09903	Canola	mitochondrion	21.78	19.43
CDX94049	Canola	cytosol	28.75	19.37
CDY57695	Canola	mitochondrion	24.52	19.24
CDY53324	Canola	mitochondrion, plastid	29.6	19.15
CDY06272	Canola	mitochondrion	21.35	19.06
CDX73880	Canola	mitochondrion	19.87	18.76
CDX97686	Canola	plastid	24.31	18.55
CDY30088	Canola	plastid	24.1	18.48
CDY24554	Canola	cytosol	5.07	15.69
CDY66759	Canola	cytosol	24.74	15.66
CDX79395	Canola	cytosol	24.52	11.32
CDY36565	Canola	cytosol	1.06	1.49

Protein Annotations

EnsemblPlants:CDY03299	EnsemblPlantsGene:GSBRNA2T00115871001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
PFAM:PF01535	PFscan:PS51375	ProteinID:CDY03299	ProteinID:CDY03299.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EE4EE0
MapMan:35.1	:	:	:	:	:

Description

BnaC09g10490D

Coordinates

chrLK031942:-:477302..478829

Molecular Weight (calculated)

53935.6 Da

IEP (calculated)

8.823

GRAVY (calculated)

-0.293

Length

473 amino acids

Sequence
(BLAST)

001: MNHLLLRLVR PKPNYILRSF PFHSTTVPHD TLQRRVARAG DPSASILRVL EGWLDEGNPV KTSELHSIVK MLRKFSRFSH ALQISDWMSE HRVHDISEGD
101: IAIRLDLIAK VNGLGEADKF FEKIPIERRN YHLYGALLNC YASKKVLHKA DQLFHEMKDL GFLRGCLPYN VMLNLYIRCG KYALLEKLLR EMDDGNVKPD
201: IFTVNTRLHA YSLVSDVEGM EKFLTGCESD PGLDLDWRTY ADAANAYIKA GSTGKAMEML RRSEQLVNPQ KRKHAYEVLM SFYGAAGKKQ EVYRLWTLYK
301: ELGGFFNTGY ISVISALFKA EDIEGVEKIM GDWEAGHSLF DVRIPHLLIT GYCKNGMMAK AEGVAKMVLQ ETSTWERLAL GYKMAGEMEK AVERWKKAIE
401: VSKPGWRPHK VVLMSCVDYV EGQRDMEGLR KILRLLSERG HISYDQLLYD MKEAGGGLGW KIVNAMGSSQ VQD

Best Arabidopsis Sequence Match ( AT2G20710.1 )
(BLAST)

001: MKHLLLLRLV LPKPNYILRR SFLFHSGKTT PSPLDPYDTL QRRVARSGDP SASIIKVLDG WLDQGNLVKT SELHSIIKML RKFSRFSHAL QISDWMSEHR
101: VHEISEGDVA IRLDLIAKVG GLGEAEKFFE TIPMERRNYH LYGALLNCYA SKKVLHKAEQ VFQEMKELGF LKGCLPYNVM LNLYVRTGKY TMVEKLLREM
201: EDETVKPDIF TVNTRLHAYS VVSDVEGMEK FLMRCEADQG LHLDWRTYAD TANGYIKAGL TEKALEMLRK SEQMVNAQKR KHAYEVLMSF YGAAGKKEEV
301: YRLWSLYKEL DGFYNTGYIS VISALLKMDD IEEVEKIMEE WEAGHSLFDI RIPHLLITGY CKKGMMEKAE EVVNILVQKW RVEDTSTWER LALGYKMAGK
401: MEKAVEKWKR AIEVSKPGWR PHQVVLMSCV DYLEGQRDME GLRKILRLLS ERGHISYDQL LYDMNGAGLS WKIVDAMGKG RYVEEREVRI

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g20710, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SKU6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.