CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73880	Canola	mitochondrion	89.38	52.1
CDY00734	Canola	mitochondrion	26.71	44.07
CDY35213	Canola	cytosol	6.16	43.9
AT3G11350.1	Thale cress	mitochondrion	49.32	40.11
CDY53324	Canola	mitochondrion, plastid	98.97	39.53
Bra001400.1-P	Field mustard	mitochondrion, plastid	98.63	38.45
CDY27645	Canola	mitochondrion	29.79	33.59
CDY35212	Canola	mitochondrion	31.85	33.1
CDY65573	Canola	mitochondrion	36.3	28.65
CDY53325	Canola	mitochondrion	56.85	23.78
CDY48421	Canola	mitochondrion	33.22	23.49
CDY27647	Canola	mitochondrion	32.19	23.1
CDY39781	Canola	mitochondrion	33.22	20.29
CDY03299	Canola	mitochondrion	32.19	19.87
CDY50357	Canola	mitochondrion	13.36	19.5
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	29.79	17.43
CDY66759	Canola	cytosol	44.52	17.4
CDY44801	Canola	mitochondrion	23.29	16.83
CDY05786	Canola	plastid	27.05	16.29
CDY31943	Canola	plastid	26.71	16.08
CDX98698	Canola	mitochondrion	26.71	15.98
KRH22399	Soybean	cytosol	25.68	15.76
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	26.71	15.66
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	26.37	15.62
KRH26940	Soybean	cytosol	26.37	15.52
CDY15126	Canola	cytosol, mitochondrion, plastid	27.05	15.43
CDY24553	Canola	mitochondrion	15.07	15.28
CDX90079	Canola	mitochondrion	26.71	15.23
Os10t0501300-01	Rice	mitochondrion	26.71	15.2
Os10t0501000-01	Rice	cytosol	23.29	15.08
CDX97288	Canola	mitochondrion	25.0	14.2
CDX91277	Canola	mitochondrion	25.0	14.07
Solyc07g054100.1.1	Tomato	cytosol	15.41	13.93
PGSC0003DMT400047256	Potato	extracellular	15.41	13.93
OQU91552	Sorghum	mitochondrion	24.32	13.92
GSMUA_Achr5P20750_001	Banana	mitochondrion	26.03	13.92
TraesCS1B01G188200.1	Wheat	mitochondrion	22.6	13.41
Zm00001d032543_P001	Maize	mitochondrion	23.29	13.15
CDY25035	Canola	mitochondrion, plastid	21.92	13.06
CDY19721	Canola	mitochondrion	21.23	13.0
TraesCS1D01G166700.1	Wheat	mitochondrion	21.92	12.93
CDX99984	Canola	mitochondrion	20.89	12.76
CDX90962	Canola	mitochondrion	21.23	12.38
CDY46999	Canola	mitochondrion	20.55	12.22
CDX96239	Canola	mitochondrion	20.55	12.22
CDX91822	Canola	mitochondrion	20.89	12.2
CDX89976	Canola	mitochondrion	21.23	12.04
CDY34141	Canola	mitochondrion	20.21	11.99
CDY15237	Canola	mitochondrion	20.89	11.89
CDY05574	Canola	mitochondrion	21.23	11.83
Os10t0501200-00	Rice	mitochondrion	25.34	11.82
CDX94049	Canola	cytosol	28.08	11.68
TraesCS1A01G168700.1	Wheat	mitochondrion	22.95	11.47
CDY39654	Canola	mitochondrion	19.86	9.65
CDY57695	Canola	mitochondrion	19.86	9.62
CDY36566	Canola	mitochondrion	19.52	9.48
CDY09903	Canola	mitochondrion	15.75	8.68
CDY06272	Canola	mitochondrion	15.41	8.49
CDX97686	Canola	plastid	17.81	8.39
CDY30088	Canola	plastid	17.47	8.27
CDY50358	Canola	cytosol	5.48	6.81
CDY24554	Canola	cytosol	3.08	5.88
CDX79395	Canola	cytosol	20.55	5.85
CDY36565	Canola	cytosol	1.03	0.9

Protein Annotations

EnsemblPlants:CDY71968	EnsemblPlantsGene:GSBRNA2T00022825001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644
PFAM:PF01535	ProteinID:CDY71968	ProteinID:CDY71968.1	TIGRFAMs:TIGR00756	UniParc:UPI0004EF1D65	UniProt:A0A078JWD6
MapMan:35.1	:	:	:	:	:

Description

BnaCnng75350DBnaCnng75350D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JWD6]

Coordinates

chrLK048309:+:973..2205

Molecular Weight (calculated)

33546.7 Da

IEP (calculated)

8.312

GRAVY (calculated)

-0.298

Length

292 amino acids

Sequence
(BLAST)

001: MSHNLQHHTR SILAHSSRTL LFCSYTNGTL PSSPRHSTTT LHSRIEAASE GKTAITRLRD SQRFRQALEV SDWMIEHKLC NLIPEDFTAR FCLIENVLGL
101: KEAEKFFESV PENQRGEAIY TALLNSYTVK KDLIGLLLKP LPYNSMMSLY FSVRKRDKVD EIMREMKENN VQFDTLTVNI ALRVYASVSD LLAMEKLLAH
201: WEGTITLHCL TGAEEIYYNE WDGSGLDFDV RIPTMLASGY REKGLVKKAD KLMIKTIRNE KMVRPIGQLL VEWGKKGNLV EPSYMRELIK DL

Best Arabidopsis Sequence Match ( AT3G11380.1 )
(BLAST)

001: MSMRHNLQRH AKRILAYSNR PRFFCSYTNV TLSSPATNQT LQSRIEAASH QKAEITTVLE QWLQQQQQQG KQLNPSLLRG IVEKLRSSNR PRQALEVSDW
101: MVEQKMYNLP EDFSARFHLT EKVLNLEEAE KFFESIPENM RFESMYNSLL RSYARQSGEK ALKKAESVFK KMKKLGLLLR PSPYNSMTSL YSSLGNRDKV
201: DEILREMKEN NVELDNVTVN NALRVYAAVS DVATMDKFLA DRKEITRLDG LTMLAMAKAY ELMSLYGEAG EIEDVHRVWD KYKATRQKDN EEFRTLIGSL
301: LKLGDTKGAE KIYYNEWECS GLEFDNRIPD MLVSGYREKG MVMKADKLVN KTLWIRGLAT PITLLLEEMD KKGNKVSPPG LRDLIKNLRD SNQLSKALEA
401: STWMCQKKVF NLFSEDYATR LHLTEKVLGL EEAENFFESS IPENMKDYSV YDTLLSCYAR SSNTQSKAEA VFEKMRELGL QSKLSPFNSL ISLYSGQGKL
501: SVVNILLCDM KHKNIEPDIV TRNNVLRANA YILAIDSMEK V

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAY6]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.