Factsheet for AT3G11350.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71968	Canola	plastid	40.11	49.32
CDX73880	Canola	mitochondrion	52.65	37.72
AT3G11380.1	Thale cress	mitochondrion	51.53	34.2
AT1G43010.1	Thale cress	mitochondrion	20.61	28.79
CDY53324	Canola	mitochondrion, plastid	56.27	27.63
Bra001400.1-P	Field mustard	mitochondrion, plastid	55.99	26.84
AT1G28020.1	Thale cress	cytosol, plastid	32.03	23.28
AT1G28000.1	Thale cress	mitochondrion	23.12	21.39
AT2G20710.1	Thale cress	mitochondrion	24.23	17.76
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	22.84	16.43
KRH26940	Soybean	cytosol	21.73	15.73
Os10t0501000-01	Rice	cytosol	19.5	15.52
KRH22399	Soybean	cytosol	20.33	15.34
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	20.89	15.06
AT4G21705.1	Thale cress	mitochondrion	20.61	15.04
Os10t0501300-01	Rice	mitochondrion	21.45	15.01
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	20.33	14.81
AT5G09450.1	Thale cress	mitochondrion	16.71	14.67
TraesCS1B01G188200.1	Wheat	mitochondrion	18.94	13.82
TraesCS1D01G166700.1	Wheat	mitochondrion	18.94	13.74
OQU91552	Sorghum	mitochondrion	19.22	13.53
GSMUA_Achr5P20750_001	Banana	mitochondrion	20.33	13.37
Zm00001d032543_P001	Maize	mitochondrion	19.22	13.35
AT1G02150.1	Thale cress	mitochondrion	18.66	12.79
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	17.27	12.63
AT4G02820.1	Thale cress	mitochondrion	18.66	12.59
TraesCS1A01G168700.1	Wheat	mitochondrion	19.78	12.16
Os10t0501200-00	Rice	mitochondrion	20.89	11.98
Solyc07g054100.1.1	Tomato	cytosol	10.59	11.76
AT1G60770.1	Thale cress	cytosol	15.6	11.41
AT4G01990.1	Thale cress	mitochondrion	15.6	11.16
PGSC0003DMT400047256	Potato	extracellular	10.03	11.15
AT2G20720.1	Thale cress	cytosol	8.91	10.7
AT1G02370.1	Thale cress	mitochondrion	14.76	9.87
AT1G80270.2	Thale cress	mitochondrion	14.76	8.89
AT1G07590.1	Thale cress	mitochondrion	13.09	8.8
AT3G15590.2	Thale cress	cytosol, mitochondrion	14.76	8.69
AT1G15480.1	Thale cress	mitochondrion	13.65	8.25

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:820308	ProteinID:AAG51431.1	ProteinID:AEE75033.1	ArrayExpress:AT3G11350
EnsemblPlantsGene:AT3G11350	RefSeq:AT3G11350	TAIR:AT3G11350	RefSeq:AT3G11350-TAIR-G	EnsemblPlants:AT3G11350.1	TAIR:AT3G11350.1
Unigene:At.50170	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0008150	InterPro:IPR011990
RefSeq:NP_187743.1	PANTHER:PTHR24015	PANTHER:PTHR24015:SF1657	UniProt:Q9CAY8	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000A617B

Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9CAY8]

Coordinates

chr3:+:3558495..3560078

Molecular Weight (calculated)

41646.2 Da

IEP (calculated)

8.875

GRAVY (calculated)

-0.526

Length

359 amino acids

Sequence
(BLAST)

001: MSMTLSLQRH AKRILAYSNR PRFFCSYRNG TLSTNQTLHG RIEAALDQKA EITARLHQAL EVSDWMIEHK ICCLVPEDFS ARFQLIENVL GLEEAEKYFE
101: SIPENLRGES LYTALLRSYA KRSEKKYLDR ASRIHIQEDE RISSFGTRDK VDESLREMKE SNIDLDRLTV NKALRVYAAA SDVAAMERFL ADWEGTVKLD
201: LMISTEQRRY TNEWQCSRLE FDVRMPIMLV SAYREKGMVE KAEKLMTRWG LKYRLCSKAC IGDKAMKLVL EMKENKIEPD SVTINNVLRV NAYGLALESM
301: EKFKSKWDGD GKTKLDAMAA AYERAGLLLK AIEIQRSKKE VYRLWNEYKN KANDGIARE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.