Factsheet for AT1G43010.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35212	Canola	mitochondrion	46.69	42.7
CDY65573	Canola	mitochondrion	46.69	32.43
Bra011054.1-P	Field mustard	mitochondrion	41.63	31.38
AT1G28000.1	Thale cress	mitochondrion	38.91	25.77
AT1G28020.1	Thale cress	cytosol, plastid	42.02	21.86
AT3G11350.1	Thale cress	mitochondrion	28.79	20.61
AT3G11380.1	Thale cress	mitochondrion	42.41	20.15
AT2G20710.1	Thale cress	mitochondrion	31.91	16.73
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	29.57	15.23
Solyc07g054090.2.1	Tomato	cytosol, mitochondrion, plastid	26.07	13.59
PGSC0003DMT400047255	Potato	cytosol, mitochondrion, plastid	26.07	13.45
TraesCS1B01G188200.1	Wheat	mitochondrion	25.29	13.21
AT5G09450.1	Thale cress	mitochondrion	21.01	13.2
AT5G27460.1	Thale cress	cytosol, mitochondrion, plastid	24.9	13.03
Os10t0501300-01	Rice	mitochondrion	25.68	12.87
GSMUA_Achr5P20750_001	Banana	mitochondrion	27.24	12.82
AT4G21705.1	Thale cress	mitochondrion	24.51	12.8
AT1G02150.1	Thale cress	mitochondrion	26.07	12.79
KRH26940	Soybean	cytosol	24.51	12.7
TraesCS1D01G166700.1	Wheat	mitochondrion	24.12	12.53
KRH22399	Soybean	cytosol	22.96	12.39
AT4G02820.1	Thale cress	mitochondrion	25.29	12.22
Os10t0501000-01	Rice	cytosol	21.4	12.2
Zm00001d032543_P001	Maize	mitochondrion	24.12	11.99
OQU91552	Sorghum	mitochondrion	23.35	11.76
AT1G60770.1	Thale cress	cytosol	22.18	11.61
TraesCS1A01G168700.1	Wheat	mitochondrion	25.68	11.3
AT1G15480.1	Thale cress	mitochondrion	24.9	10.77
AT3G15590.2	Thale cress	cytosol, mitochondrion	24.9	10.49
AT1G02370.1	Thale cress	mitochondrion	21.01	10.06
Os10t0501200-00	Rice	mitochondrion	23.74	9.74
AT1G80270.2	Thale cress	mitochondrion	22.57	9.73
AT4G01990.1	Thale cress	mitochondrion	18.68	9.56
AT1G07590.1	Thale cress	mitochondrion	19.46	9.36
PGSC0003DMT400047256	Potato	extracellular	10.51	8.36
Solyc07g054100.1.1	Tomato	cytosol	10.51	8.36
AT2G20720.1	Thale cress	cytosol	7.78	6.69
CDY35213	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:840900	ProteinID:AAG50822.1	ProteinID:AAG51513.1	ProteinID:AEE31938.1
ArrayExpress:AT1G43010	EnsemblPlantsGene:AT1G43010	RefSeq:AT1G43010	TAIR:AT1G43010	RefSeq:AT1G43010-TAIR-G	EnsemblPlants:AT1G43010.1
TAIR:AT1G43010.1	Unigene:At.52005	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002885
InterPro:IPR011990	RefSeq:NP_175000.1	PFAM:PF01535	PANTHER:PTHR24015	PANTHER:PTHR24015:SF644	InterPro:Pentatricopeptide_repeat
UniProt:Q9C545	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000009E38A	:	:	:

Description

Putative pentatricopeptide repeat-containing protein At1g43010 [Source:UniProtKB/Swiss-Prot;Acc:Q9C545]

Coordinates

chr1:+:16153609..16154468

Molecular Weight (calculated)

29728.3 Da

IEP (calculated)

10.251

GRAVY (calculated)

-0.432

Length

257 amino acids

Sequence
(BLAST)

001: MGKAQIIQHQ ARRILSQSNR NCLFRRSYET LPAANQTLPS RIKTDINQKA SIIPLLEQWR KQGYEVNPSH LRGLIKNLSD CKNFTTALEA SKWMFKHSVF
101: DNFPEDCAAQ LHLVNTVLGL EEAEKMFKNI PEKMRDYSVL LSSYTKPVRT VDKAEATFKK MRELGFLLKP YLFNSMICLY GQLQRLDMVE KLLYKLKKNN
201: MEVGSLKVNN VSRVYANINA MEKFKTWVSK EGIELERDTI VAMAKAYHRA GSIEKAR

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.