Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 6
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031586.1-P | Field mustard | mitochondrion | 87.64 | 88.14 |
| CDY06272 | Canola | mitochondrion | 87.08 | 87.74 |
| CDY09903 | Canola | mitochondrion | 86.7 | 87.36 |
| PGSC0003DMT400069375 | Potato | cytosol | 58.61 | 66.03 |
| KRH10262 | Soybean | mitochondrion | 62.17 | 65.48 |
| VIT_06s0004g04690.t01 | Wine grape | mitochondrion | 64.42 | 65.4 |
| KRH23068 | Soybean | mitochondrion | 61.8 | 65.09 |
| Solyc06g071900.2.1 | Tomato | mitochondrion | 61.24 | 61.12 |
| Zm00001d024521_P001 | Maize | mitochondrion | 53.37 | 55.45 |
| GSMUA_Achr9P23230_001 | Banana | mitochondrion | 53.37 | 54.6 |
| TraesCS7D01G293300.1 | Wheat | mitochondrion | 51.87 | 54.0 |
| TraesCS7A01G296400.1 | Wheat | mitochondrion | 51.5 | 53.61 |
| TraesCS7B01G189100.1 | Wheat | mitochondrion | 51.31 | 53.41 |
| HORVU7Hr1G066420.6 | Barley | plastid | 47.75 | 48.48 |
| OQU79953 | Sorghum | cytosol | 53.37 | 45.6 |
| AT1G60770.1 | Thale cress | cytosol | 21.35 | 23.22 |
| AT5G09450.1 | Thale cress | mitochondrion | 15.73 | 20.54 |
| AT4G01990.1 | Thale cress | mitochondrion | 19.29 | 20.52 |
| AT5G27460.1 | Thale cress | cytosol, mitochondrion, plastid | 18.73 | 20.37 |
| AT1G02150.1 | Thale cress | mitochondrion | 19.66 | 20.04 |
| AT2G20710.1 | Thale cress | mitochondrion | 18.35 | 20.0 |
| AT4G21705.1 | Thale cress | mitochondrion | 18.35 | 19.92 |
| AT4G02820.1 | Thale cress | mitochondrion | 19.48 | 19.55 |
| AT1G43010.1 | Thale cress | mitochondrion | 9.36 | 19.46 |
| AT1G15480.1 | Thale cress | mitochondrion | 21.16 | 19.02 |
| AT1G80270.2 | Thale cress | mitochondrion | 20.79 | 18.62 |
| AT1G28020.1 | Thale cress | cytosol, plastid | 17.04 | 18.42 |
| AT1G02370.1 | Thale cress | mitochondrion | 18.16 | 18.06 |
| AT3G15590.2 | Thale cress | cytosol, mitochondrion | 19.85 | 17.38 |
| AT3G11380.1 | Thale cress | mitochondrion | 16.1 | 15.9 |
| AT2G20720.1 | Thale cress | cytosol | 7.87 | 14.05 |
| AT3G11350.1 | Thale cress | mitochondrion | 8.8 | 13.09 |
| AT1G28000.1 | Thale cress | mitochondrion | 9.36 | 12.89 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:837272 | ProteinID:AAF79544.1 | ProteinID:AEE28146.1 | ArrayExpress:AT1G07590 |
| EnsemblPlantsGene:AT1G07590 | RefSeq:AT1G07590 | TAIR:AT1G07590 | RefSeq:AT1G07590-TAIR-G | EnsemblPlants:AT1G07590.1 | TAIR:AT1G07590.1 |
| EMBL:AY054199 | Unigene:At.23699 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0046686 | GO:GO:0090305 |
| InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_172238.1 | PFAM:PF01535 | PFAM:PF13041 | PO:PO:0000005 |
| PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007057 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PO:PO:0025281 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF588 | InterPro:Pentatricopeptide_repeat | UniProt:Q940Q2 | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AA836 | SEG:seg | : | : | : |
Description
Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
Coordinates
chr1:-:2336477..2339391
Molecular Weight (calculated)
60852.0 Da
IEP (calculated)
9.422
GRAVY (calculated)
-0.286
Length
534 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.