Factsheet for VIT_06s0004g04690.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069375	Potato	cytosol	66.92	74.26
KRH10262	Soybean	mitochondrion	71.1	73.77
KRH23068	Soybean	mitochondrion	69.58	72.19
Solyc06g071900.2.1	Tomato	mitochondrion	69.39	68.22
AT1G07590.1	Thale cress	mitochondrion	65.4	64.42
CDY09903	Canola	mitochondrion	63.69	63.21
Bra031586.1-P	Field mustard	mitochondrion	63.5	62.9
CDY06272	Canola	mitochondrion	63.31	62.83
GSMUA_Achr9P23230_001	Banana	mitochondrion	60.46	60.92
Zm00001d024521_P001	Maize	mitochondrion	56.65	57.98
TraesCS7D01G293300.1	Wheat	mitochondrion	53.61	54.97
TraesCS7A01G296400.1	Wheat	mitochondrion	52.85	54.19
TraesCS7B01G189100.1	Wheat	mitochondrion	52.66	54.0
HORVU7Hr1G066420.6	Barley	plastid	49.62	49.62
OQU79953	Sorghum	cytosol	56.84	47.84
VIT_07s0005g01630.t01	Wine grape	mitochondrion	20.15	22.46
VIT_00s0394g00020.t01	Wine grape	cytosol	20.72	22.29
VIT_16s0039g02800.t01	Wine grape	cytosol	21.1	22.29
VIT_14s0060g01120.t01	Wine grape	cytosol, mitochondrion	20.72	21.89
VIT_12s0028g03870.t01	Wine grape	cytosol, mitochondrion	20.72	21.84
VIT_18s0001g07000.t01	Wine grape	mitochondrion	20.72	21.71
VIT_15s0021g01300.t01	Wine grape	plastid	21.1	21.06
VIT_10s0597g00040.t01	Wine grape	extracellular	20.15	20.95
VIT_19s0014g02920.t01	Wine grape	mitochondrion, plastid	19.2	20.04
VIT_11s0078g00180.t01	Wine grape	cytosol	7.22	19.9
VIT_08s0007g05090.t01	Wine grape	mitochondrion	22.24	18.75
VIT_12s0028g03880.t01	Wine grape	cytosol, mitochondrion	16.73	17.56

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100260459	wikigene:100260459	MapMan:35.1	ProteinID:CCB43571	ProteinID:CCB43571.1
UniProt:F6GV12	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0046686	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
EntrezGene:LOC100260459	wikigene:LOC100260459	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF588	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002109790
ArrayExpress:VIT_06s0004g04690	EnsemblPlantsGene:VIT_06s0004g04690	EnsemblPlants:VIT_06s0004g04690.t01	unigene:Vvi.22572	unigene:Vvi.7212	RefSeq:XP_002281058
RefSeq:XP_002281058.1	RefSeq:XP_002281058.2	:	:	:	:

Description

No Description!

Coordinates

chr6:+:5647309..5652542

Molecular Weight (calculated)

60432.6 Da

IEP (calculated)

9.589

GRAVY (calculated)

-0.223

Length

526 amino acids

Sequence
(BLAST)

001: MQAGVLLWRH SFFRAIRRTV VFSSPVNQIA YSFNPFGTET AALSFEESSK PNQEEESKSL SWRIEKLPRG EPVGLAFQSW MGEGCPIHRG HIFHAINRLR
101: KLKFNKRALE VMEWVVRERP YRPKELDYSY LLEFTTKLHG ISQGEKLFSH VPLEFQNELL YNNLVIACLD KGVIRLSLAY MKKMRELGHP ISYLVFNRLI
201: ILHSSPHRRK IIPRILTQMK ADKVARHVST YNILMKIEAN EHNIEGLVKV FGEMKQQQVE PNEVSYCLLA TAHAVAKLYT VAEAYVEAVE KSITGNNWST
301: LDVLIILYGY LGKPTDLERT WGIVQELPHV RSKSYMLAIE AFGRIGQLNR AEELWLEIKS KKELKSTEQF NSMISVYSKH GFIDKASGLF REMEMNGCKA
401: NAITYRNLAL GCLKAGLLEE ALKTLELGKG LTISTRIRKS IPWLETTLSI VEIFSENGDV ENAEKLFEEL KTANYTRYTF VYNTLIKAYV KAKVYDPNLL
501: RRMILGGARP DAETYSLMKL AEQFQT

Best Arabidopsis Sequence Match ( AT1G07590.1 )
(BLAST)

001: MRSIIALMRQ REYFVQAIRR TTCVASPALN QTNFQASSFL TTLISSKKSP EETCIGSEEE EEEPNKCLSL RIEKLPKGVT VGSALQSWMG DGFPVHGGDV
101: YHAINRLRKL GRNKRALELM EWIIRERPYR LGELEYSYLL EFTVKLHGVS QGEKLFTRVP QEFQNELLYN NLVIACLDQG VIRLALEYMK KMRELGYRTS
201: HLVYNRLIIR NSAPGRRKLI AKDLALMKAD KATPHVSTYH ILMKLEANEH NIDGVLKAFD GMKKAGVEPN EVSYCILAMA HAVARLYTVA EAYTEEIEKS
301: ITGDNWSTLD ILMILYGRLG KEKELARTWN VIRGFHHVRS KSYLLATEAF ARVGNLDRAE ELWLEMKNVK GLKETEQFNS LLSVYCKDGL IEKAIGVFRE
401: MTGNGFKPNS ITYRHLALGC AKAKLMKEAL KNIEMGLNLK TSKSIGSSTP WLETTLSIIE CFAEKGDVEN SEKLFEEVKN AKYNRYAFVY NALFKAYVKA
501: KVYDPNLFKR MVLGGARPDA ESYSLLKLVE QYKP

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g07590, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q940Q2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.